DN618236

Overview
NameDN618236
Unique NameDN618236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618236 vs. ExPASy Swiss-Prot
Match: Y1814_ARATH (Uncharacterized methyltransferase At1g78140, chloroplastic OS=Arabidopsis thaliana GN=At1g78140 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 3.940e-57
Identity = 108/188 (57.45%), Postives = 131/188 (69.68%), Query Frame = 1
Query:  100 FVAKIRASSTAFVETKPSEPSFVE------NEASTSKNVLACPICYKPLTWIGDXXXXXXXXXXXXX-QCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYE 642
            FV++   +S+A V  + +  S V+      ++    K +LACPICY  L WI                QCNTCK++YSG  TH D+  ASGSK Y E M  +TE FR P +SF+YERGWRQNF+WGGFPGPEKEFE+ K YLKPVLGGNIIDASCGSG+FSR+F +S LFSLV+ALDYSENML+QCYE
Sbjct:   37 FVSRSAHASSASVSVETNSNSNVDFVIEKKDKNRGEKKILACPICYNSLAWISQPNGLIESAASGIQVQCNTCKRSYSGNETHLDLAVASGSKRYSEPMPLSTELFRTPLVSFLYERGWRQNFIWGGFPGPEKEFEMAKAYLKPVLGGNIIDASCGSGMFSRLFTRSDLFSLVIALDYSENMLRQCYE 224          
BLAST of DN618236 vs. ExPASy Swiss-Prot
Match: Y2104_ARATH (Uncharacterized methyltransferase At2g41040, chloroplastic OS=Arabidopsis thaliana GN=At2g41040 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.408e-38
Identity = 75/150 (50.00%), Postives = 94/150 (62.67%), Query Frame = 1
Query:  196 VLACPICYKPLTWIGDXXXXXXXXXXXXXQCNTCKKTYSGVGTHFDMTAASGSKDYGELMSPATEFFRMPFMSFIYERGWRQNFVWGGFPGPEKEFELMKGYLKPVLGGNIIDASCGSGLFSRIFAKSGLFSLVVALDYSENMLKQCYEF 645
            V ACP+CY+PL   G              +C  C KTYS    + D+T  +   DY E+    TE FR P +SF+YERGWRQ F   GFPGP++EF + + Y K   GG ++D SCGSGLFSR FA+SG +S V+ALDYSENML+QC EF
Sbjct:   78 VFACPVCYEPLMRKGPSGINLQAIYRSGFKCGQCNKTYSSKDEYLDLTVTADLDDYNEVKPITTELFRSPLVSFLYERGWRQAFKRSGFPGPDEEFRMAEEYFKEAEGGLLVDVSCGSGLFSRKFAQSGKYSGVIALDYSENMLRQCKEF 227          
The following BLAST results are available for this feature:
BLAST of DN618236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
Y1814_ARATH3.940e-5757.45Uncharacterized methyltransferase At1g78140, chlor... [more]
Y2104_ARATH1.408e-3850.00Uncharacterized methyltransferase At2g41040, chlor... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02E17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002E17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618236 ID=DN618236; Name=DN618236; organism=Citrus sinensis; type=EST; length=646bp
AGCAGCAGCAGCTTCTTCTCGGTGTCTCTACCGGGTCGACTCGGTAACTC
GCGACGGTGTTCTGTCAAACCCAATCCTTCGCCGATCTTTATACGCAAGT
TTGTTGCCAAAATTCGGGCTTCTTCAACAGCCTTTGTCGAAACCAAACCA
TCGGAGCCGAGTTTTGTTGAAAATGAAGCAAGTACAAGCAAGAACGTGTT
AGCTTGTCCCATCTGTTATAAACCTCTAACGTGGATTGGTGATTCATCCT
TGTCTATAGAATCTGCAGCTGGGTCTAGTTTGCAATGTAACACTTGTAAA
AAGACTTACAGTGGCGTGGGAACTCATTTTGATATGACTGCGGCTAGTGG
GTCAAAAGATTATGGTGAATTGATGAGTCCTGCCACTGAATTTTTCAGGA
TGCCATTCATGTCATTTATCTATGAGAGGGGCTGGCGTCAAAACTTTGTA
TGGGGTGGTTTTCCAGGCCCAGAGAAGGAGTTTGAATTGATGAAGGGTTA
TCTAAAGCCTGTTTTAGGTGGAAACATCATTGATGCTAGCTGTGGTAGTG
GGCTGTTTTCACGAATTTTTGCTAAGAGTGGATTGTTTTCTCTTGTTGTT
GCTCTGGACTATTCAGAGAACATGCTGAAGCAGTGTTATGAATTTG
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