DN618234

Overview
NameDN618234
Unique NameDN618234
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN618234 vs. ExPASy Swiss-Prot
Match: YBEB_SHIFL (Uncharacterized protein ybeB OS=Shigella flexneri GN=ybeB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.495e-11
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:  103 LQD--VEKILTDVRADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLP-SVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWT 420
            LQD  ++KI  D++  D+  + V  K   TD M+I TG S+ HV +IA  ++    Q  R  G    +LP  V+G+++  W+++D G VIVH + E +R  Y LE LW+
Sbjct:    6 LQDFVIDKI-DDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV----QESRAAG----LLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105
[Close]
BLAST of DN618234 vs. ExPASy Swiss-Prot
Match: YBEB_ECOLI (Uncharacterized protein ybeB OS=Escherichia coli (strain K12) GN=ybeB PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.495e-11
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:  103 LQD--VEKILTDVRADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLP-SVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWT 420
            LQD  ++KI  D++  D+  + V  K   TD M+I TG S+ HV +IA  ++    Q  R  G    +LP  V+G+++  W+++D G VIVH + E +R  Y LE LW+
Sbjct:    6 LQDFVIDKI-DDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV----QESRAAG----LLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105
[Close]
BLAST of DN618234 vs. ExPASy Swiss-Prot
Match: YBEB_ECOL6 (Uncharacterized protein ybeB OS=Escherichia coli O6 GN=ybeB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.495e-11
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 1 
Query:  103 LQD--VEKILTDVRADDVKVIPVGEKCDWTDYMVIATGRSTWHVKNIAQAIIYKAKQRQREVGAKQMMLP-SVQGQDTGKWVIIDSGKVIVHALDENARAYYNLEDLWT 420
            LQD  ++KI  D++  D+  + V  K   TD M+I TG S+ HV +IA  ++    Q  R  G    +LP  V+G+++  W+++D G VIVH + E +R  Y LE LW+
Sbjct:    6 LQDFVIDKI-DDLKGQDIIALDVQGKSSITDCMIICTGTSSRHVMSIADHVV----QESRAAG----LLPLGVEGENSADWIVVDLGDVIVHVMQEESRRLYELEKLWS 105
The following BLAST results are available for this feature:
BLAST of DN618234 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YBEB_SHIFL1.495e-1137.61Uncharacterized protein ybeB OS=Shigella flexneri ... [more]
YBEB_ECOLI1.495e-1137.61Uncharacterized protein ybeB OS=Escherichia coli (... [more]
YBEB_ECOL61.495e-1137.61Uncharacterized protein ybeB OS=Escherichia coli O... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02E16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002E16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618234 ID=DN618234; Name=DN618234; organism=Citrus sinensis; type=EST; length=652bp
CTCAATCTTCCGAAATCACTTTCATCATGGAAGCAGCAAGAGCTGAGTCT
GAGATTGTCGTCTTTGTCCACCGTTTCGGGAACTGACGACGGGTTGCTGA
ATTTACAAGATGTGGAGAAGATATTGACTGATGTTAGAGCAGACGACGTT
AAGGTGATACCGGTCGGAGAGAAATGTGATTGGACAGATTATATGGTGAT
TGCCACCGGTAGGTCCACGTGGCACGTCAAGAATATCGCTCAAGCCATTA
TTTACAAGGCTAAGCAGAGGCAGAGAGAGGTAGGAGCTAAGCAGATGATG
CTACCCAGTGTTCAAGGGCAGGATACAGGAAAATGGGTTATCATCGACTC
TGGCAAAGTGATTGTTCACGCACTTGATGAGAATGCTAGAGCCTACTACA
ATTTGGAAGACCTTTGGACCTCAGAGCCATCTAAATCAGCAACAGTTCAG
GATTTGCAAAAAGCATTTGTTAAGGTTCGTCGCAAGAATAATTCCAAAAA
GCCAGTGGAAAAAAGTGCTTAGTCACAAGAATAATTCCAAAAAGCCACGC
TCACTTTGGTGTAATGAGAGCGTCATTTGAGTTTTCTTCTTTGCAATCAT
AGCTTCTTACATTATGAAGATCAATGTTTGATATGTGAACAGACATTTTT
AA
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