DN618212

Overview
NameDN618212
Unique NameDN618212
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length765
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN618212 vs. ExPASy Swiss-Prot
Match: GCN5_ARATH (Histone acetyltransferase GCN5 OS=Arabidopsis thaliana GN=HAG1 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 5.360e-49
Identity = 121/254 (47.64%), Postives = 142/254 (55.91%), Query Frame = 1 
Query:   34 AHSAHLTAPNXXXXXXXXXXXXXXXXXXXXXIHKRKLXXXXXXXX--SEDHAP--HAFPPS-FSADTRDGALTSNDDLESISARGAXXXXXXXXXXXXXXXXXXXXXXXXXX----MRTFTAARLENNNSV-GSARNTKLKTENSTVKIENSDGGKEXXXXXXXXXXXXXXXXXXVLGTAGKEDTVKIFTENIQASGAYSXXXXXXXXXXXXGNLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRL 765
            +HS+HL A N                     +HKRKL          SEDHAP   +FPPS FSADTRDGALTSND+LESISARGA                              +RTFTAARL++++ V GS+RNTKLKTE+STVK+E+SDGGK+                  + G   K+++VK+  EN Q SGAY             G LKFVC SND IDEHM+ LIGLKNIFARQLPNMPKEYIVRL
Sbjct:    3 SHSSHLNAANRSRSSQTPSPSHSASASVTSSLHKRKLAATTAANAAASEDHAPPSSSFPPSSFSADTRDGALTSNDELESISARGADTDSDPDESEDIVVDDDEDEFAPEQDQDSSIRTFTAARLDSSSGVNGSSRNTKLKTESSTVKLESSDGGKDGGSSVVGTGVSGTVGGSSISGLVPKDESVKVLAENFQTSGAYIAREEALKREEQAGRLKFVCYSNDSIDEHMMCLIGLKNIFARQLPNMPKEYIVRL 256
[Close]
BLAST of DN618212 vs. ExPASy Swiss-Prot
Match: GCN5_ORYSJ (Histone acetyltransferase GCN5 OS=Oryza sativa subsp. japonica GN=GCN5 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.736e-23
Identity = 64/137 (46.72%), Postives = 74/137 (54.01%), Query Frame = 1 
Query:  355 MRTFTAARLENNNSVGSARNTKLKTENSTVKIENSDGGKEXXXXXXXXXXXXXXXXXXVLGTAGKEDTVKIFTENIQASGAYSXXXXXXXXXXXXGNLKFVCLSNDGIDEHMVWLIGLKNIFARQLPNMPKEYIVRL 765
            + TFTAARL+      S R  K   E+STV    +                            GKED   +FT+NIQ SGAYS            G LKF+C SNDG+DEHM+WL+GLKNIFARQLPNMPKEYIVRL
Sbjct:   75 LHTFTAARLDGAPPSSSGRPPK--PESSTVSAAAAAAAAAAAPKPDSASAAAGD---------GKEDPKGLFTDNIQTSGAYSAREEGLKREEEAGRLKFLCYSNDGVDEHMIWLVGLKNIFARQLPNMPKEYIVRL 200
The following BLAST results are available for this feature:
BLAST of DN618212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
GCN5_ARATH5.360e-4947.64Histone acetyltransferase GCN5 OS=Arabidopsis thal... [more]
GCN5_ORYSJ1.736e-2346.72Histone acetyltransferase GCN5 OS=Oryza sativa sub... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02E05_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618212 ID=DN618212; Name=DN618212; organism=Citrus sinensis; type=EST; length=765bp
TTCAAGTCCATCTGAAGAGAGATGGATACGCACGCCCACTCCGCTCACCT
AACCGCACCGAACCGCTCCCGCAGCTCACAGACCCCGTCCCCGTCCCACT
CCGCCTCTGCATCCGCCACGTCATCCATTCACAAGCGCAAGCTTGCAGCA
ACAGCCGCGGCGGGTGCGTCTGAGGACCACGCGCCGCATGCATTCCCTCC
CTCCTTCTCCGCCGACACTCGTGACGGCGCGTTGACCTCGAATGACGACC
TCGAGAGCATCTCCGCCCGCGGCGCCGACTCTGACGCTGACGACTCCGAG
GATGCCGTCGTTGACGACGATGAGGACGAGTTCGAGAACGACAACGACTC
CTCTATGCGTACTTTCACCGCGGCTCGCCTGGAGAATAATAATTCCGTCG
GCTCGGCAAGAAATACGAAGCTAAAGACGGAGAATTCGACCGTTAAAATT
GAGAATTCCGATGGCGGGAAGGAAGGGGTTACCTCCGGGAGTGGTGTGCT
TGGGTCCACTGCTCTGGCCGGTAGCTCGGTGCTGGGAACTGCAGGTAAAG
AAGACACGGTGAAGATTTTTACAGAGAATATACAAGCTAGTGGAGCTTAT
AGTGCAAGAGAGGAGCTCTTGAAGAGAGAGGAGGAAGCTGGAAACCTGAA
GTTCGTATGCCTTTCAAATGATGGTATTGATGAGCATATGGTTTGGTTGA
TAGGATTGAAGAATATATTTGCAAGGCAACTACCTAACATGCCCAAGGAG
TACATTGTGCGTCTT
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