DN618210

Overview
NameDN618210
Unique NameDN618210
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618210 vs. ExPASy Swiss-Prot
Match: NPS13_ARATH (Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NPSN13 PE=1 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 8.050e-71
Identity = 134/154 (87.01%), Postives = 147/154 (95.45%), Query Frame = 3
Query:  105 MSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLGNKKVELFDMGAGVS-EPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQ 563
            MSPQLEQIHGEIRD+FRAL+NGFQ+LDKIKDS RQ+KQLEELT +MRECKRL+KE DRE+KDEEARN PEVNKQLNDEKQSMIKELNSYVALRKTYM++LGNKKVELFDMGAGVS EPTA+ENVQVASSMSNQEL+DAG K MDETDQAI+RS+
Sbjct:    7 MSPQLEQIHGEIRDHFRALANGFQRLDKIKDSTRQSKQLEELTDKMRECKRLVKEFDRELKDEEARNSPEVNKQLNDEKQSMIKELNSYVALRKTYMSTLGNKKVELFDMGAGVSGEPTAEENVQVASSMSNQELVDAGMKRMDETDQAIERSK 160          
BLAST of DN618210 vs. ExPASy Swiss-Prot
Match: NPS12_ARATH (Novel plant SNARE 12 OS=Arabidopsis thaliana GN=NPSN12 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 5.399e-67
Identity = 126/154 (81.82%), Postives = 144/154 (93.51%), Query Frame = 3
Query:  105 MSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSLGNKKVELFDMGAGVS-EPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQ 563
            MSP LEQIHGEIRD+FRAL+NGFQ+LDKIKDS+RQ+KQLEEL  +MR+CKRL+KE DRE+KD EARN P+VNKQLNDEKQSMIKELNSYVALRKTY+N+LGNKKVELFD GAGVS EPTA+ENVQ+AS+MSNQEL+DAG K MDETDQAI+RS+
Sbjct:    7 MSPHLEQIHGEIRDHFRALANGFQRLDKIKDSSRQSKQLEELAEKMRDCKRLVKEFDRELKDGEARNSPQVNKQLNDEKQSMIKELNSYVALRKTYLNTLGNKKVELFDTGAGVSGEPTAEENVQMASTMSNQELVDAGMKRMDETDQAIERSK 160          
BLAST of DN618210 vs. ExPASy Swiss-Prot
Match: NPS11_ARATH (Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NPSN11 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.294e-44
Identity = 92/156 (58.97%), Postives = 120/156 (76.92%), Query Frame = 3
Query:  102 SMSPQLEQIHGEIRDNFRALSNGFQKLDKIKDSNRQTKQLEELTGRMRECKRLIKEMDREIKDEEARNPPEVNKQLNDEKQSMIKELNSYVALRKTYMNSL--GNKKVELFDMGAGVSEPTADENVQVASSMSNQELIDAGKKTMDETDQAIKRSQ 563
            ++S +L +I G+I D FRALSNGFQKL+KIKD+NRQ++QLEELT +MR+CK LIK+ DREIK  E+ N    N+ LND +QSM+KELNSYVAL+K Y ++L   NK+V+LFD   G  E   +ENV +AS+MSNQEL+D G   MD+TDQAI+R +
Sbjct:    6 AVSEELAEIEGQINDIFRALSNGFQKLEKIKDANRQSRQLEELTDKMRDCKSLIKDFDREIKSLESGNDASTNRMLNDRRQSMVKELNSYVALKKKYSSNLASNNKRVDLFD---GPGEEHMEENVLLASNMSNQELMDKGNSMMDDTDQAIERGK 158          
The following BLAST results are available for this feature:
BLAST of DN618210 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NPS13_ARATH8.050e-7187.01Novel plant SNARE 13 OS=Arabidopsis thaliana GN=NP... [more]
NPS12_ARATH5.399e-6781.82Novel plant SNARE 12 OS=Arabidopsis thaliana GN=NP... [more]
NPS11_ARATH1.294e-4458.97Novel plant SNARE 11 OS=Arabidopsis thaliana GN=NP... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02E04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618210 ID=DN618210; Name=DN618210; organism=Citrus sinensis; type=EST; length=563bp
CATCAGCCCAAAATTTCCCCCTTTTTGCTATATTTCAATGGTATTGATAT
CTACATTATTATTATTATTTGTTTTTTATTAAAAGGAAAGAGGAGTACTG
TTCGATGAGCCCTCAGTTGGAGCAGATCCACGGCGAAATTCGCGATAATT
TTCGAGCTCTCTCAAATGGCTTCCAGAAGCTGGATAAGATCAAAGATTCC
AACCGACAAACTAAGCAGCTGGAAGAACTCACTGGGAGGATGAGGGAGTG
TAAAAGATTAATTAAAGAGATGGATCGTGAAATTAAAGATGAAGAAGCCC
GAAATCCTCCGGAAGTCAATAAGCAACTCAATGACGAGAAGCAATCTATG
ATAAAAGAGTTGAACTCTTATGTTGCATTGAGGAAAACGTATATGAATAG
CCTTGGTAATAAGAAGGTTGAACTCTTTGATATGGGAGCGGGAGTCAGTG
AACCTACAGCTGATGAAAATGTTCAAGTGGCATCATCCATGTCAAATCAA
GAACTAATTGATGCTGGGAAGAAGACAATGGATGAGACTGATCAGGCTAT
TAAACGTTCTCAA
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