FC921940

Overview
NameFC921940
Unique NameFC921940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length264
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13547 contig Csv1_Contig13547:1..264. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC921940 vs. ExPASy Swiss-Prot
Match: PAO4_ARATH (Probable polyamine oxidase 4 OS=Arabidopsis thaliana GN=PAO4 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.017e-23
Identity = 49/56 (87.50%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:   97 DASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTL 264
            +ASFKV +LESRDR+GGRIHTDYSFGCPVDMGASWLHGV +ENPLAP+IRRLGLTL
Sbjct:   49 EASFKVTVLESRDRIGGRIHTDYSFGCPVDMGASWLHGVSDENPLAPIIRRLGLTL 104
[Close]
BLAST of FC921940 vs. ExPASy Swiss-Prot
Match: PAO2_ARATH (Probable polyamine oxidase 2 OS=Arabidopsis thaliana GN=PAO2 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.623e-21
Identity = 45/56 (80.36%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:   97 DASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTL 264
            DASF+V++LESRDR+GGR+HTDYSFG PVD+GASWLHGVC ENPLAP+I RLGL L
Sbjct:   48 DASFQVMVLESRDRIGGRVHTDYSFGFPVDLGASWLHGVCKENPLAPVIGRLGLPL 103
[Close]
BLAST of FC921940 vs. ExPASy Swiss-Prot
Match: PAO3_ARATH (Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO3 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.169e-21
Identity = 45/56 (80.36%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:   97 DASFKVVLLESRDRLGGRIHTDYSFGCPVDMGASWLHGVCNENPLAPLIRRLGLTL 264
            DASF+VV+LESRDR+GGR+HTDYSFG PVD+GASWLHGVC ENPLA +I RLGL L
Sbjct:   49 DASFQVVVLESRDRIGGRVHTDYSFGFPVDLGASWLHGVCKENPLAAVIGRLGLPL 104
The following BLAST results are available for this feature:
BLAST of FC921940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PAO4_ARATH1.017e-2387.50Probable polyamine oxidase 4 OS=Arabidopsis thalia... [more]
PAO2_ARATH1.623e-2180.36Probable polyamine oxidase 2 OS=Arabidopsis thalia... [more]
PAO3_ARATH6.169e-2180.36Polyamine oxidase 3 OS=Arabidopsis thaliana GN=PAO... [more]
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Properties
Property NameValue
Genbank descriptionC06054B10T7 RindPdigS Citrus sinensis cDNA clone C06054B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921940 ID=FC921940; Name=FC921940; organism=Citrus sinensis; type=EST; length=264bp
ACGCGGGTCATTGAGAGGGCGCAAATCGGTTCACTGCCTTCTGTCATTGT
GATTGGTGGTGGTATTTCGGGTCTTGCCGCTGCCCGGATCCTCTATGATG
CTTCTTTTAAGGTGGTCTTACTGGAATCGCGGGACAGACTTGGTGGTCGT
ATTCATACGGACTACTCATTTGGTTGTCCAGTGGACATGGGAGCTTCATG
GCTACATGGTGTATGCAATGAGAATCCCTTGGCCCCACTGATACGTCGTC
TGGGGCTTACATTG
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