DN618198

Overview
NameDN618198
Unique NameDN618198
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length446
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11399 contig Csv1_Contig11399:58..503. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618198 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 4.353e-42
Identity = 85/114 (74.56%), Postives = 99/114 (86.84%), Query Frame = 1
Query:  109 SSFHGSPIITS--RVTPIRSSSQSQTHTISMSLTPQYDFNSFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQ 444
            SSFHG+P+  S  R+ PI+SS  +   +IS S +P YD N+F FDPIKESIVSREMTRRYMTDM+TYADTDV+VVGAGSAGLSCAYE+SKNP+I++AIIEQSVSPGGGAWLGGQ
Sbjct:   23 SSFHGAPMSPSLLRLQPIKSSRPNNL-SISASASPPYDLNTFKFDPIKESIVSREMTRRYMTDMITYADTDVVVVGAGSAGLSCAYELSKNPNIQIAIIEQSVSPGGGAWLGGQ 135          
BLAST of DN618198 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 1.893e-37
Identity = 79/112 (70.54%), Postives = 93/112 (83.04%), Query Frame = 1
Query:  109 SSFHGSPIITSRVTPIRSSSQSQTHTISMSLTPQYDFNSFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQ 444
            SSFHGS I  +   PI    + ++ ++  + T  YD N+FTFDPIKESIVSREMTRRYMTDM+TYA+TDV+VVGAGSAGLS AYEISKNP+++VAIIEQSVSPGGGAWLGGQ
Sbjct:   21 SSFHGSAISAA---PISIGLKPRSFSVRAT-TAGYDLNAFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQ 128          
BLAST of DN618198 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.093e-36
Identity = 77/114 (67.54%), Postives = 95/114 (83.33%), Query Frame = 1
Query:  109 SSFHGSPIITS--RVTPIRSSSQSQTHTISMSLTPQYDFNSFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQ 444
            SSF+G+P+  S  RV P ++ ++    ++S + +P YD  +FTFDPIKESIVSREMTRRYM DM+TYADTDV+VVGAGS+GL C YE+SKNPS++VAIIEQSVSPGGGAWLGGQ
Sbjct:   20 SSFYGTPLAPSSIRVQPTKAGAKPSI-SMSGAPSPPYDLKAFTFDPIKESIVSREMTRRYMMDMITYADTDVVVVGAGSSGLVC-YELSKNPSVQVAIIEQSVSPGGGAWLGGQ 131          
BLAST of DN618198 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 8.792e-35
Identity = 77/124 (62.10%), Postives = 93/124 (75.00%), Query Frame = 1
Query:  106 KSSFHGSPI-ITSRVTPIR---------SSSQSQTHTISMSLT-PQYDFNSFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQ 444
            KSSF GS +   +R TP           + +     ++SMS + P YD  SF F PIKESIVSREMTRRYMTDM+TYADTDV++VGAGSAGLSCAYE+SK+P++ +AI+EQSVSPGGGAWLGGQ
Sbjct:   11 KSSFAGSRLPAATRTTPASLVVATGPRGAGAGPICASMSMSSSNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITYADTDVVIVGAGSAGLSCAYELSKDPAVSIAIVEQSVSPGGGAWLGGQ 134          
BLAST of DN618198 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.148e-34
Identity = 79/122 (64.75%), Postives = 90/122 (73.77%), Query Frame = 1
Query:  106 KSSFHGS--PIITSRVTPI-------RSSSQSQTHTISMSLTPQYDFNSFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEISKNPSIRVAIIEQSVSPGGGAWLGGQ 444
            KSSF GS  P  T   TP        R+       +IS S  P YD  SF F PIKESIVSREMTRRYMTDM+T+ADTDV++VGAGSAGLSCAYE+SK+P++ VAI+EQSVSPGGGAWLGGQ
Sbjct:   11 KSSFAGSRLPSATRTTTPSSVAVATPRAGGGPIRASIS-SPNPPYDLTSFRFSPIKESIVSREMTRRYMTDMITHADTDVVIVGAGSAGLSCAYELSKDPTVSVAIVEQSVSPGGGAWLGGQ 131          
BLAST of DN618198 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 8.535e-22
Identity = 49/82 (59.76%), Postives = 66/82 (80.49%), Query Frame = 1
Query:  205 PQYDFN-SFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEI-SKNPSIRVAIIEQSVSPGGGAWLGGQ 444
            P Y  + SF+F PI+ES VSR MTRRY +D+  YA++D+++VGAGSAGL+ AY I ++ P +++AIIE SV+PGGGAWLGGQ
Sbjct:   41 PTYSLDESFSFAPIRESTVSRAMTRRYFSDLDKYAESDIVIVGAGSAGLTAAYYIGTRRPDLKIAIIEASVAPGGGAWLGGQ 122          
BLAST of DN618198 vs. ExPASy Swiss-Prot
Match: THI4_YEAST (Thiazole biosynthetic enzyme, mitochondrial OS=Saccharomyces cerevisiae GN=THI4 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.456e-21
Identity = 56/110 (50.91%), Postives = 73/110 (66.36%), Query Frame = 1
Query:  139 SRVTPIRSSSQSQTHTISMSLT-------PQYDFNSFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEISKN-PSIRVAIIEQSVSPGGGAWLGGQ 444
            S  +   S+S SQ H  S  +T        + D++ F F PI+ES VSR MT RY  D+  +A +DVI+VGAGS+GLS AY I+KN P ++V IIE SV+PGGG+WLGGQ
Sbjct:    2 SATSTATSTSASQLHLNSTPVTHCLSDIVKKEDWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQ 111          
BLAST of DN618198 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 1.902e-21
Identity = 52/108 (48.15%), Postives = 73/108 (67.59%), Query Frame = 1
Query:  130 IITSRVTPIRSSSQSQTHTISMSLTPQYD--FNSFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEISK-NPSIRVAIIEQSVSPGGGAWLGGQ 444
            ++ S   P+  +SQ++       L   +   ++ F F PI+ES VSR MTRRY  D+  YA++DV++VGAGS GLS AY ++K  P +++AI+E SVSPGGGAWLGGQ
Sbjct:   21 VVVSETAPVEGASQTK-------LLDHFGGKWDEFKFAPIRESQVSRAMTRRYFEDLDKYAESDVVIVGAGSCGLSTAYVLAKARPDLKIAIVEASVSPGGGAWLGGQ 121          
BLAST of DN618198 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 4.236e-21
Identity = 53/106 (50.00%), Postives = 72/106 (67.92%), Query Frame = 1
Query:  130 IITSRVTPIRSSSQSQTHTISMSLTPQYDFNSFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEI-SKNPSIRVAIIEQSVSPGGGAWLGGQ 444
            + TS   P+ S + + T T+   L     ++ F F PI+ES VSR MTRRY  D+  YA++D++++GAGS GLS AY +  K P +++AIIE SVSPGGGAWLGGQ
Sbjct:   16 LATSTKLPVMSKNIN-TKTVEEMLG---QWDDFKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIIGAGSCGLSAAYILGKKRPDLKIAIIEASVSPGGGAWLGGQ 117          
BLAST of DN618198 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.233e-20
Identity = 51/99 (51.52%), Postives = 66/99 (66.67%), Query Frame = 1
Query:  151 PIRSSSQSQTHTISMSLTPQYDFNSFTFDPIKESIVSREMTRRYMTDMVTYADTDVIVVGAGSAGLSCAYEI-SKNPSIRVAIIEQSVSPGGGAWLGGQ 444
            P+  S  S   T    +  ++D   F F PI+ES VSR MTRRY  D+  YA++D+++VGAGS GLS  Y +  K P +++AIIE SVSPGGGAWLGGQ
Sbjct:   25 PVGLSKNSAAATTVEEMEGKWD--DFKFAPIRESQVSRAMTRRYFQDLDNYAESDIVIVGAGSCGLSTRYILGKKRPDLKIAIIEASVSPGGGAWLGGQ 121          
The following BLAST results are available for this feature:
BLAST of DN618198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
THI4_CITSI4.353e-4274.56Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ARATH1.893e-3770.54Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI4_ALNGL2.093e-3667.54Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI41_MAIZE8.792e-3562.10Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE1.148e-3464.75Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI2_SCHPO8.535e-2259.76Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]
THI4_YEAST1.456e-2150.91Thiazole biosynthetic enzyme, mitochondrial OS=Sac... [more]
THI4_ASPOR1.902e-2148.15Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_FUSOX4.236e-2150.00Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSSH1.233e-2051.52Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02D22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618198 ID=DN618198; Name=DN618198; organism=Citrus sinensis; type=EST; length=446bp
TTCAACCCTACGCAAGTGTCCAAACAAATTAACATAATGGCAGCCATGTC
TACAACCCTCACTTCCTCACTCTCTTCAGGCCCTAAATCTTCTTTCTTAG
ACCACAAGTCATCTTTCCATGGCAGCCCAATCATCACTTCTCGTGTCACT
CCCATCAGATCCTCCTCACAATCACAAACCCACACCATTTCCATGTCCTT
GACTCCACAGTACGACTTCAACTCATTCACATTCGACCCCATCAAAGAAT
CAATCGTTTCTCGTGAAATGACCCGCCGTTACATGACTGACATGGTCACC
TACGCCGACACTGACGTCATCGTCGTCGGTGCTGGCTCCGCCGGTCTCTC
CTGCGCTTACGAGATCAGCAAGAACCCCTCAATCCGTGTCGCCATAATCG
AGCAATCAGTAAGCCCTGGTGGTGGCGCATGGCTCGGTGGCCAGCT
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