FC921939

Overview
NameFC921939
Unique NameFC921939
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13533 contig Csv1_Contig13533:4..490. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921939 vs. ExPASy Swiss-Prot
Match: ACCO_DIOKA (1-aminocyclopropane-1-carboxylate oxidase OS=Diospyros kaki GN=DK-ACO1 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 7.486e-47
Identity = 85/110 (77.27%), Postives = 98/110 (89.09%), Query Frame = 3
Query:   96 PXISLENINGAERAAILEKINEACEKWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 425
            P I++E +NG ERAA +  IN+ACE WGFFELVNHGI PE MDTVER+TKAHY+KCMEQRFKELVAS+ALEGIQ EV DMDWEST+++RHLPQS I+EVPDLDEEYR+VM
Sbjct:    5 PVINMEKMNGEERAATMGLINDACENWGFFELVNHGIPPELMDTVERVTKAHYKKCMEQRFKELVASKALEGIQAEVTDMDWESTYFLRHLPQSNISEVPDLDEEYRRVM 114          
BLAST of FC921939 vs. ExPASy Swiss-Prot
Match: ACCO1_PETHY (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Petunia hybrida GN=ACO1 PE=1 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.195e-44
Identity = 81/110 (73.64%), Postives = 95/110 (86.36%), Query Frame = 3
Query:   96 PXISLENINGAERAAILEKINEACEKWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 425
            P ISL+ +NG ERAA +E I +ACE WGFFELVNHGI  E MDTVE++TK HY+KCMEQRFKELVAS+ALEG+Q EV DMDWESTF+++HLP S I+EVPDLDEEYR+VM
Sbjct:    5 PIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDTVEKMTKGHYKKCMEQRFKELVASKALEGVQAEVTDMDWESTFFLKHLPISNISEVPDLDEEYREVM 114          
BLAST of FC921939 vs. ExPASy Swiss-Prot
Match: ACCO2_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Solanum lycopersicum GN=ACO2 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.012e-43
Identity = 78/110 (70.91%), Postives = 94/110 (85.45%), Query Frame = 3
Query:   96 PXISLENINGAERAAILEKINEACEKWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 425
            P I+LE +NGAER A +EKIN+ACE WGFFELVNHGI  E MDTVE+LTK HY+KCMEQRFKELVA + LEG++ EV DMDWESTF++RHLP S I+++PDLD+ YR+VM
Sbjct:    5 PIINLEKLNGAERVATMEKINDACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFKELVAKKGLEGVEVEVTDMDWESTFFLRHLPSSNISQLPDLDDVYREVM 114          
BLAST of FC921939 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.254e-43
Identity = 78/110 (70.91%), Postives = 95/110 (86.36%), Query Frame = 3
Query:   96 PXISLENINGAERAAILEKINEACEKWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 425
            P I+LE +NG  R A +EKI +ACE WGFFELV+HGI  EF+DTVERLTK HYR+C+EQRFKELVAS+ LE ++TEVNDMDWESTFY+RHLP+S I+EVPDL+++YR VM
Sbjct:    5 PIINLEGLNGEGRKATMEKIKDACENWGFFELVSHGIPTEFLDTVERLTKEHYRQCLEQRFKELVASKGLEAVKTEVNDMDWESTFYLRHLPKSNISEVPDLEDQYRNVM 114          
BLAST of FC921939 vs. ExPASy Swiss-Prot
Match: ACCO4_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Solanum lycopersicum GN=ACO4 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 2.254e-43
Identity = 79/110 (71.82%), Postives = 93/110 (84.55%), Query Frame = 3
Query:   96 PXISLENINGAERAAILEKINEACEKWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 425
            P I+LEN+NG ERA  +E I +ACE WGFFELVNHGI  E MDTVE+LTK HY+KCMEQRFKELVAS+ LE +Q EV D+DWESTF++RHLP S I++VPDLDEEYR+VM
Sbjct:    5 PIINLENLNGDERAKTMEMIKDACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFKELVASKGLEAVQAEVTDLDWESTFFLRHLPTSNISQVPDLDEEYREVM 114          
BLAST of FC921939 vs. ExPASy Swiss-Prot
Match: ACCO3_PETHY (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Petunia hybrida GN=ACO3 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 8.565e-43
Identity = 78/110 (70.91%), Postives = 93/110 (84.55%), Query Frame = 3
Query:   96 PXISLENINGAERAAILEKINEACEKWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 425
            P I+LE +NG+ER A +E I +ACE WGFFELVNHGI  E MDTVE+LTK HY+KCMEQRFKELVAS+ LE +Q EV D+DWESTF++RHLP S I+EVPDLD+EYR+VM
Sbjct:    5 PIINLEKLNGSERDATMEMIKDACENWGFFELVNHGIPHEVMDTVEKLTKGHYKKCMEQRFKELVASKGLEAVQAEVTDLDWESTFFLRHLPVSNISEVPDLDDEYREVM 114          
BLAST of FC921939 vs. ExPASy Swiss-Prot
Match: ACCO4_PETHY (1-aminocyclopropane-1-carboxylate oxidase 4 OS=Petunia hybrida GN=ACO4 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.492e-42
Identity = 78/110 (70.91%), Postives = 92/110 (83.64%), Query Frame = 3
Query:   96 PXISLENINGAERAAILEKINEACEKWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 425
            P I+LEN+ GAER A +E I +ACE WGFFELVNHGI  E MDTVE+ TK HY+KCMEQRFKELVAS+ LE +Q EV D+DWESTF++RHLP S I+EVPDLD+EYR+VM
Sbjct:    5 PIINLENLCGAERDATMEMIKDACENWGFFELVNHGIPHEVMDTVEKFTKGHYKKCMEQRFKELVASKGLEAVQAEVTDLDWESTFFLRHLPVSNISEVPDLDDEYREVM 114          
BLAST of FC921939 vs. ExPASy Swiss-Prot
Match: ACCO1_SOLLC (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 2.492e-42
Identity = 77/110 (70.00%), Postives = 92/110 (83.64%), Query Frame = 3
Query:   96 PXISLENINGAERAAILEKINEACEKWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 425
            P I+LE +NG ERA  +E I +ACE WGFFELVNHGI  E MDTVE++TK HY+KCMEQRFKELVAS+ LE +Q EV D+DWESTF++RHLP S I++VPDLDEEYR+VM
Sbjct:    5 PIINLEKLNGDERANTMEMIKDACENWGFFELVNHGIPHEVMDTVEKMTKGHYKKCMEQRFKELVASKGLEAVQAEVTDLDWESTFFLRHLPTSNISQVPDLDEEYREVM 114          
BLAST of FC921939 vs. ExPASy Swiss-Prot
Match: ACCO_ACTDE (1-aminocyclopropane-1-carboxylate oxidase OS=Actinidia deliciosa GN=ACO PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 7.251e-42
Identity = 73/110 (66.36%), Postives = 92/110 (83.64%), Query Frame = 3
Query:   96 PXISLENINGAERAAILEKINEACEKWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 425
            P I +E +NG ERA  +EKI +ACE WGFFELVNHGI  E MDTVERLTK HY KCMEQRFKE+VA++ LE +Q+E+ND+DWESTF++RHLP S I+E+PDL++++RK M
Sbjct:    5 PVIDMEKLNGEERAPTMEKIKDACENWGFFELVNHGISHELMDTVERLTKEHYNKCMEQRFKEMVATKGLEAVQSEINDLDWESTFFLRHLPVSNISEIPDLEQDHRKAM 114          
BLAST of FC921939 vs. ExPASy Swiss-Prot
Match: ACCO_TOBAC (1-aminocyclopropane-1-carboxylate oxidase OS=Nicotiana tabacum GN=ACO PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 9.470e-42
Identity = 76/110 (69.09%), Postives = 92/110 (83.64%), Query Frame = 3
Query:   96 PXISLENINGAERAAILEKINEACEKWGFFELVNHGIEPEFMDTVERLTKAHYRKCMEQRFKELVASRALEGIQTEVNDMDWESTFYVRHLPQSTINEVPDLDEEYRKVM 425
            P I+LE +NG+ERA  +E I +ACE WGFFELVNHGI  E MDTVE++TK HY+KCMEQRFKELVAS+ LE +Q EV D+DWESTF++RHLP S I EVPDLD++YR+VM
Sbjct:    5 PIINLEKLNGSERADTMEMIKDACENWGFFELVNHGIPHEVMDTVEKMTKGHYKKCMEQRFKELVASKGLEAVQAEVTDLDWESTFFLRHLPVSNICEVPDLDDQYREVM 114          
The following BLAST results are available for this feature:
BLAST of FC921939 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
ACCO_DIOKA7.486e-4777.271-aminocyclopropane-1-carboxylate oxidase OS=Diosp... [more]
ACCO1_PETHY1.195e-4473.641-aminocyclopropane-1-carboxylate oxidase 1 OS=Pet... [more]
ACCO2_SOLLC1.012e-4370.911-aminocyclopropane-1-carboxylate oxidase 2 OS=Sol... [more]
ACCO_PRUMU2.254e-4370.911-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]
ACCO4_SOLLC2.254e-4371.821-aminocyclopropane-1-carboxylate oxidase 4 OS=Sol... [more]
ACCO3_PETHY8.565e-4370.911-aminocyclopropane-1-carboxylate oxidase 3 OS=Pet... [more]
ACCO4_PETHY2.492e-4270.911-aminocyclopropane-1-carboxylate oxidase 4 OS=Pet... [more]
ACCO1_SOLLC2.492e-4270.001-aminocyclopropane-1-carboxylate oxidase 1 OS=Sol... [more]
ACCO_ACTDE7.251e-4266.361-aminocyclopropane-1-carboxylate oxidase OS=Actin... [more]
ACCO_TOBAC9.470e-4269.091-aminocyclopropane-1-carboxylate oxidase OS=Nicot... [more]

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Properties
Property NameValue
Genbank descriptionC06054B09T7 RindPdigS Citrus sinensis cDNA clone C06054B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921939 ID=FC921939; Name=FC921939; organism=Citrus sinensis; type=EST; length=488bp
ACGCGGGGAACAAGCTCACAAACACATACACATACACAAACACTCACAAA
CACACAGCTTGTTAAAGAAAGAATTCAGAGATATGGAGAACTTCCCCGNT
TATCAGCTTGGAGAACATCAATGGTGCTGAAAGAGCGGCTATCTTGGAGA
AGATCAACGAGGCCTGTGAGAAATGGGGCTTCTTTGAGCTGGTGAATCAT
GGAATTGAGCCGGAGTTTATGGACACAGTGGAGAGATTGACCAAGGCGCA
TTACAGAAAATGCATGGAGCAAAGATTCAAGGAGCTTGTTGCAAGCAGGG
CACTTGAAGGTATCCAAACCGAGGTCAATGACATGGACTGGGAAAGCACT
TTCTATGTGCGTCACCTCCCTCAGTCGACCATCAATGAAGTCCCAGATCT
TGATGAGGAATACAGGAAGGTGATGAAGGAATTTGCATTGNAATTGGAGA
AATTAGCAGAGGAGCTATTGGACNTGTTTATGCGAGAA
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