DN618191

Overview
NameDN618191
Unique NameDN618191
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length621
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8802 contig Csv1_Contig8802:74..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN618191 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.982e-11
Identity = 34/59 (57.63%), Postives = 38/59 (64.41%), Query Frame = -2 
Query:  444 EATNVEKAFQTILTEIFHXXXXXXXXXXXXXXXXXLPGQGTTINVNDASPSVKKGCCST 620
            EATN+EKAFQTILTEI+H                 +PGQGTTINV D S + KKGCCST
Sbjct:  158 EATNIEKAFQTILTEIYHIVSKKALAAQEATAGASVPGQGTTINVADTSGNTKKGCCST 216
The following BLAST results are available for this feature:
BLAST of DN618191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RB11C_LOTJA2.982e-1157.63Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02D19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618191 ID=DN618191; Name=DN618191; organism=Citrus sinensis; type=EST; length=621bp
TTTTTTTTTTGATAGAGAAGTAATCTTAAAATAGTGATACATCTATTACA
GGTTAGAAAGTAACCGAATGAACAAAAAAGGAACAAAAAACCAAACAGCA
ACACAAAAACTTACAATGCCTCTTCTTCTGCCCCCCTACTTCTCCAAAAG
TTAAATATAAGCTTCCAATTTCCTAGCCAAATTCCAGCATTGAACAATAT
TACTTTTCTAGGCAGCTGAGTTGAGAAAAGGGGCAAAAGAAAGGAGGAAT
CACCTATTTAAATTTCACAAGCTTCCTTATCACAACTCAACGAAGTAAAA
GAAAAGTATTCTACATGTCTCTCTCTTAGCCAAAGATTAAAAGAAATGGA
AAATGAAAGAAAAAGAAAAAAAAAAAGAAACAAAAAGAAAAATGTCGGCC
GGTATTGCATCTGTTTTCTTCCTCAAGTAACTCTATCATCTTAAGTAGAA
CAGCAGCCTTTCTTCACACTTGGTGATGCATCATTAACATTAATAGTGGT
TCCTTGACCAGGAAGAGCGGTATTAGCAGATGCCTGTTGGGCTGCTAATG
CTTTTTTGCTTATGATGTGGAAAATCTCTGTCAAAATGGTCTGGAATGCC
TTCTCAACATTGGTTGCTTCC
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