DN618183

Overview
NameDN618183
Unique NameDN618183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN618183_ssr58 microsatellite DN618183_ssr58:58..83. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5776 contig Csv1_Contig5776:1..645. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN618183 vs. ExPASy Swiss-Prot
Match: NPR1_ARATH (Regulatory protein NPR1 OS=Arabidopsis thaliana GN=NPR1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.552e-13
Identity = 39/142 (27.46%), Postives = 78/142 (54.93%), Query Frame = 3 
Query:  243 NPKETWLEAEIVV-EGKSVAVNRSILSERSQFFRRLF-------NLRNDGKARYLLTDLVPHGKVGYEAFKDTLHFLYVGMIKESPPEVSTCVDDACAHFACPPAINYGIELMYASAAFQMKELVVLSERIAGSNLDNVCLE 644
            +P + + +A++V+ +G+ V+ +R +LS RS FF+          +  N    +  L ++    +VG+++    L ++Y   ++  P  VS C D+ C H AC PA+++ +E++Y +  F++ EL+ L +R     +D V +E
Sbjct:   59 SPDDFYSDAKLVLSDGREVSFHRCVLSARSSFFKSALAAAKKEKDSNNTAAVKLELKEIAKDYEVGFDSVVTVLAYVYSSRVRPPPKGVSECADENCCHVACRPAVDFMLEVLYLAFIFKIPELITLYQRHLLDVVDKVVIE 200
The following BLAST results are available for this feature:
BLAST of DN618183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
NPR1_ARATH1.552e-1327.46Regulatory protein NPR1 OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02D14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618183 ID=DN618183; Name=DN618183; organism=Citrus sinensis; type=EST; length=645bp
TCGCGATTCAAGCTTCAGTTATAAGCCTTTCATTGTGATTGATATTATTC
TTTCTTGATATATATATATATATATATATATATAGATTCAGTTTGAATAT
GGTTCTTGATGGTATCATGGAAAATGCGAACGAAAAGTCAGCATCTTTGA
GTTTTGTCTCATCATATCAAACTTGTTGGTCCACTAATCAATCAACAGGC
ACTTGTGATCTTGATAATTTGAACTTAAGGAGGCAAAGCAGCAATCCCAA
AGAGACATGGCTTGAAGCTGAGATTGTTGTTGAGGGCAAATCAGTGGCGG
TTAATCGCAGCATATTGTCTGAGCGCAGTCAATTTTTTCGTCGGCTTTTT
AATTTGAGAAATGATGGGAAAGCCAGGTATCTTTTGACTGATTTGGTGCC
TCATGGGAAGGTTGGATATGAAGCTTTCAAGGATACCTTGCATTTTCTTT
ACGTTGGAATGATTAAGGAATCTCCTCCAGAAGTGTCCACGTGTGTTGAT
GATGCTTGTGCTCATTTTGCTTGCCCTCCTGCTATTAATTATGGTATTGA
GTTGATGTATGCTTCCGCTGCTTTTCAGATGAAAGAACTCGTTGTTCTTT
CGGAGAGAATTGCAGGGTCAAATCTTGACAATGTTTGTCTCGAGA
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