DN618177

Overview
NameDN618177
Unique NameDN618177
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN618177_ssr101 microsatellite DN618177_ssr101:101..112. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5775 contig Csv1_Contig5775:1..596. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618177 vs. ExPASy Swiss-Prot
Match: AIBP_BOVIN (Apolipoprotein A-I-binding protein OS=Bos taurus GN=APOA1BP PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.043e-34
Identity = 76/144 (52.78%), Postives = 97/144 (67.36%), Query Frame = 2
Query:  179 SSAQNSDSVSHLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDR----VLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPKRTQKPLYTGLVTQLESLSIPFL-SVEDLPLDFSKDFDIIVDAMFGFSF 595
            S    S +V +L+Q EA  +D+ L     FSVDQLMELAGLS AT+IA+AY  +   R    VL ICGPGNNGGDGLV AR L  FGY+P + YPKR  KPL+T LVTQ + + IPFL  +   P+   + ++++VDA+FGFSF
Sbjct:   49 SEVMASSAVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSLSRSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTALVTQCQKMDIPFLGEMPPEPMLIDELYELVVDAIFGFSF 192          
BLAST of DN618177 vs. ExPASy Swiss-Prot
Match: AIBP_MOUSE (Apolipoprotein A-I-binding protein OS=Mus musculus GN=Apoa1bp PE=1 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 5.191e-34
Identity = 77/148 (52.03%), Postives = 101/148 (68.24%), Query Frame = 2
Query:  167 SDAMSSAQNSDSVSHLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDR----VLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPKRTQKPLYTGLVTQLESLSIPFL-SVEDLPLDFSKDFDIIVDAMFGFSF 595
            S+ M+ A    +V +L+Q EA  +D+ L     FSVDQLMELAGLS AT+IA+AY  +   +    VL ICGPGNNGGDGLV AR L  FGY+P + YPKR  KPL+TGLVTQ + + IPFL  +   P+   + ++++VDA+FGFSF
Sbjct:   43 SETMAGA----AVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSKSPPTVLVICGPGNNGGDGLVCARHLKLFGYQPTIYYPKRPNKPLFTGLVTQCQKMDIPFLGEMPPEPMMVDELYELVVDAIFGFSF 186          
BLAST of DN618177 vs. ExPASy Swiss-Prot
Match: AIBP_HUMAN (Apolipoprotein A-I-binding protein OS=Homo sapiens GN=APOA1BP PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 5.191e-34
Identity = 76/144 (52.78%), Postives = 96/144 (66.67%), Query Frame = 2
Query:  179 SSAQNSDSVSHLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDR----VLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPKRTQKPLYTGLVTQLESLSIPFL-SVEDLPLDFSKDFDIIVDAMFGFSF 595
            S    S  V +L+Q EA  +D+ L     FSVDQLMELAGLS AT+IA+AY  +   R    VL ICGPGNNGGDGLV AR L  FGY+P + YPKR  KPL+T LVTQ + + IPFL  +   P+   + ++++VDA+FGFSF
Sbjct:   49 SEVMASTVVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKAYPPTSMSRSPPTVLVICGPGNNGGDGLVCARHLKLFGYEPTIYYPKRPNKPLFTALVTQCQKMDIPFLGEMPAEPMTIDELYELVVDAIFGFSF 192          
BLAST of DN618177 vs. ExPASy Swiss-Prot
Match: AIBP_PIG (Apolipoprotein A-I-binding protein OS=Sus scrofa GN=APOA1BP PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 4.395e-33
Identity = 74/139 (53.24%), Postives = 93/139 (66.91%), Query Frame = 2
Query:  194 SDSVSHLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDR----VLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPKRTQKPLYTGLVTQLESLSIPFL-SVEDLPLDFSKDFDIIVDAMFGFSF 595
            S +V +L+Q EA  +D+ L     FSVDQLMELAGLS AT+IA+ Y  +   R    VL ICGPGNNGGDGLV AR L  FGY P + YPKR  KPL+T LVTQ + + IPFL  +   P    + ++++VDA+FGFSF
Sbjct:   54 SSAVKYLSQEEAQAVDQELFNEYQFSVDQLMELAGLSCATAIAKVYPPTSLSRSPPTVLVICGPGNNGGDGLVCARHLKLFGYHPTIYYPKRPNKPLFTALVTQCQKMDIPFLDEMPSEPTLIDELYELVVDAIFGFSF 192          
BLAST of DN618177 vs. ExPASy Swiss-Prot
Match: AIBP_DANRE (Apolipoprotein A-I-binding protein OS=Danio rerio GN=apoa1bp PE=2 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 3.482e-30
Identity = 70/135 (51.85%), Postives = 86/135 (63.70%), Query Frame = 2
Query:  203 VSHLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEY----DRVLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPKRTQKPLYTGLVTQLESLSIPFLSVEDLPLDFSKDFDIIVDAMFGFSF 595
            V +L Q EA +IDE L     FSVDQLMELAGLS AT++A+ Y  +       RVL ICGPGNNGGDGLV AR L  FGY+P V YPKR  K L+  L  Q + + IPFL+         + + ++VDA+FGFSF
Sbjct:   53 VKYLGQEEAQQIDEELFSDFSFSVDQLMELAGLSCATAVAKGYPVTSLLKSPARVLVICGPGNNGGDGLVCARHLKLFGYEPSVLYPKRPNKQLFQNLSIQCQKMEIPFLTEMPEADLIDEAYSLVVDAIFGFSF 187          
BLAST of DN618177 vs. ExPASy Swiss-Prot
Match: YJEFN_DROAN (YjeF N-terminal domain-containing protein GF19489 OS=Drosophila ananassae GN=GF19489 PE=4 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.548e-30
Identity = 70/133 (52.63%), Postives = 87/133 (65.41%), Query Frame = 2
Query:  203 VSHLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDRVLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPKRTQKPLYTGLVTQLESLSIPFLSVEDLPL--DFSKDFDIIVDAMFGFSF 595
            V +L+Q EA  +D+ L     FSVDQLMELAGLS A +I++ +   +Y RVL  CGPGNNGGDGLV AR L   GY P + YPK T KPLY  L  Q + + I    VED P   + + +FD+IVDA+FGFSF
Sbjct:    2 VKYLSQSEAINVDQELFNDYKFSVDQLMELAGLSCAHAISKCFPTDKYGRVLICCGPGNNGGDGLVCARHLALMGYTPTIYYPKPTAKPLYENLSHQCKLMEI--CRVEDCPAINEAASNFDLIVDALFGFSF 132          
BLAST of DN618177 vs. ExPASy Swiss-Prot
Match: YJEFN_DROSE (YjeF N-terminal domain-containing protein GM11335 OS=Drosophila sechellia GN=GM11335 PE=4 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.948e-29
Identity = 65/133 (48.87%), Postives = 89/133 (66.92%), Query Frame = 2
Query:  203 VSHLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDRVLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPKRTQKPLYTGLVTQLESLSIPFLSVEDLPL--DFSKDFDIIVDAMFGFSF 595
            + +L Q+EA  +D+ L     FSVDQLMELAGLS A ++A+ + A ++ R+L  CGPGNNGGDGLVAAR L   GY P + YPK T KPL+  L  Q + + I    V++ P     ++D+D+I+DA+FGFSF
Sbjct:    3 LKYLNQKEAIAVDQELFNEYKFSVDQLMELAGLSCAHAVAKCFPAEKHPRILVCCGPGNNGGDGLVAARHLALMGYTPTIYYPKPTAKPLFENLSHQCQQMDI--CDVKECPSVESAARDYDLILDALFGFSF 133          
BLAST of DN618177 vs. ExPASy Swiss-Prot
Match: YJEFN_DROME (YjeF N-terminal domain-containing protein CG2974 OS=Drosophila melanogaster GN=CG2974 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.948e-29
Identity = 65/133 (48.87%), Postives = 89/133 (66.92%), Query Frame = 2
Query:  203 VSHLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDRVLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPKRTQKPLYTGLVTQLESLSIPFLSVEDLPL--DFSKDFDIIVDAMFGFSF 595
            + +L Q+EA  +D+ L     FSVDQLMELAGLS A ++A+ + A ++ R+L  CGPGNNGGDGLVAAR L   GY P + YPK T KPL+  L  Q + + I    V++ P     ++D+D+I+DA+FGFSF
Sbjct:    3 LKYLNQKEAIAVDQELFNDYKFSVDQLMELAGLSCAHAVAKCFPAEKHPRILVCCGPGNNGGDGLVAARHLALMGYTPTIYYPKPTAKPLFENLSHQCQQMDI--CDVKECPSVESAARDYDLILDALFGFSF 133          
BLAST of DN618177 vs. ExPASy Swiss-Prot
Match: YJEFN_DROYA (YjeF N-terminal domain-containing protein GE15417 OS=Drosophila yakuba GN=GE15417 PE=4 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 5.028e-29
Identity = 65/133 (48.87%), Postives = 89/133 (66.92%), Query Frame = 2
Query:  203 VSHLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDRVLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPKRTQKPLYTGLVTQLESLSIPFLSVEDLP--LDFSKDFDIIVDAMFGFSF 595
            + +L Q+EA ++D+ L     FSVDQLMELAGLS A ++A+ + A ++ R+L  CGPGNNGGDGLVAAR L   GY P + YPK T KPL+  L  Q + + I    V++ P     + D+D+I+DA+FGFSF
Sbjct:    3 LKYLNQKEAIDVDQELFTEYKFSVDQLMELAGLSCAHAVAKCFPAEKHPRILVCCGPGNNGGDGLVAARHLSLMGYTPTIYYPKPTAKPLFENLSHQCQMMDI--CGVKECPSVATAASDYDLILDALFGFSF 133          
BLAST of DN618177 vs. ExPASy Swiss-Prot
Match: MU182_SCHPO (Meiotically up-regulated gene 182 protein OS=Schizosaccharomyces pombe GN=mug182 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.120e-28
Identity = 66/134 (49.25%), Postives = 85/134 (63.43%), Query Frame = 2
Query:  200 SVSHLTQREAAEIDETLMGPLGFSVDQLMELAGLSVATSIAEAYKASEYDRVLAICGPGNNGGDGLVAARQLYHFGYKPFVCYPKRTQKPLYTGLVTQLESLSIPFLSVEDLP--LDFSKDFDIIVDAMFGFSF 595
            S+S L+   A  +D  LM    FS+DQLMELAGLSV+ ++   Y  S+Y +VL  CGPGNNGGDGLVAAR L+ +GYKP V YPK +   LY  L  QL+ L IP +   D        +D  ++VD++FGFSF
Sbjct:    2 SISCLSASAAKALDAELMSAGAFSIDQLMELAGLSVSQAVYREYPPSQYSQVLICCGPGNNGGDGLVAARHLWQYGYKPTVYYPKPSSPELYKRLCKQLDDLDIPVVKSHDSNHFSQLLRDSKLVVDSIFGFSF 135          
The following BLAST results are available for this feature:
BLAST of DN618177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
AIBP_BOVIN3.043e-3452.78Apolipoprotein A-I-binding protein OS=Bos taurus G... [more]
AIBP_MOUSE5.191e-3452.03Apolipoprotein A-I-binding protein OS=Mus musculus... [more]
AIBP_HUMAN5.191e-3452.78Apolipoprotein A-I-binding protein OS=Homo sapiens... [more]
AIBP_PIG4.395e-3353.24Apolipoprotein A-I-binding protein OS=Sus scrofa G... [more]
AIBP_DANRE3.482e-3051.85Apolipoprotein A-I-binding protein OS=Danio rerio ... [more]
YJEFN_DROAN4.548e-3052.63YjeF N-terminal domain-containing protein GF19489 ... [more]
YJEFN_DROSE2.948e-2948.87YjeF N-terminal domain-containing protein GM11335 ... [more]
YJEFN_DROME2.948e-2948.87YjeF N-terminal domain-containing protein CG2974 O... [more]
YJEFN_DROYA5.028e-2948.87YjeF N-terminal domain-containing protein GE15417 ... [more]
MU182_SCHPO1.120e-2849.25Meiotically up-regulated gene 182 protein OS=Schiz... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02D10_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618177 ID=DN618177; Name=DN618177; organism=Citrus sinensis; type=EST; length=596bp
CTCGCTTCTGGCACAGTCGCTCACTCTCGCTTACCACTACAACACTTCTC
CAGCAATCAAATCCACTTGCAATCCCTTCTCTCCTCTCGTCTCCAACCAG
TCCTCCTCCTCCTCTGTGTTTCTCCGTCCAGTTTCAGCTCCCGCAATTCG
TGCGTTTTGCTCAAAATCAGACGCAATGTCGTCGGCACAAAATTCCGATT
CTGTATCTCATCTCACTCAGCGAGAAGCTGCCGAAATTGATGAGACTCTC
ATGGGACCTCTCGGCTTCAGTGTCGATCAGCTTATGGAATTGGCTGGTTT
GAGTGTAGCAACATCCATAGCAGAGGCTTACAAAGCAAGTGAATATGATC
GTGTGCTTGCGATATGCGGTCCGGGGAACAATGGAGGTGATGGTTTGGTA
GCTGCTCGACAGCTGTATCATTTTGGATACAAGCCGTTTGTCTGTTATCC
AAAGCGTACTCAAAAACCACTTTATACTGGTCTGGTTACACAGCTTGAAT
CGCTATCAATCCCTTTCCTGTCAGTGGAGGATCTACCATTGGACTTTTCA
AAGGACTTCGATATCATCGTAGATGCAATGTTTGGGTTCTCCTTTC
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