DN618172

Overview
NameDN618172
Unique NameDN618172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length489
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7404 contig Csv1_Contig7404:1018..1506. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618172 vs. ExPASy Swiss-Prot
Match: SMT1_ARATH (Cycloartenol-C-24-methyltransferase OS=Arabidopsis thaliana GN=SMT1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.470e-21
Identity = 47/62 (75.81%), Postives = 57/62 (91.94%), Query Frame = -1
Query:  304 RLTSVGRFVTRNRVKALEFVGLAPKGSQRVQDFLEKAAEGLVAGGRKEIFTPMYFFLARKPQ 489
            RLT+VGRF+T+N VK LE++ LAP+GSQRV +FLE+AAEGLV GGR+EIFTPMYFFLARKP+
Sbjct:  275 RLTAVGRFITKNMVKILEYIRLAPQGSQRVSNFLEQAAEGLVDGGRREIFTPMYFFLARKPE 336          
BLAST of DN618172 vs. ExPASy Swiss-Prot
Match: SMT1_ORYSJ (Cycloartenol-C-24-methyltransferase 1 OS=Oryza sativa subsp. japonica GN=Smt1-1 PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.226e-21
Identity = 48/61 (78.69%), Postives = 55/61 (90.16%), Query Frame = -1
Query:  307 RLTSVGRFVTRNRVKALEFVGLAPKGSQRVQDFLEKAAEGLVAGGRKEIFTPMYFFLARKP 489
            RLT+VGR +TR  VKALE+VGLAP+GS+RV +FLEKAAEGLV GG+KEIFTPMYFFL RKP
Sbjct:  281 RLTTVGRAITRTMVKALEYVGLAPQGSERVSNFLEKAAEGLVEGGKKEIFTPMYFFLVRKP 341          
BLAST of DN618172 vs. ExPASy Swiss-Prot
Match: ERG6_YARLI (Sterol 24-C-methyltransferase OS=Yarrowia lipolytica GN=ERG6 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.605e-12
Identity = 34/62 (54.84%), Postives = 48/62 (77.42%), Query Frame = -1
Query:  304 RLTSVGRFVTRNRVKALEFVGLAPKGSQRVQDFLEKAAEGLVAGGRKEIFTPMYFFLARKPQ 489
            R + +GR VT N + ALE +GLAP+GS++V + LE AA  LVAGG+K++FTPM  F++RKP+
Sbjct:  317 RTSRLGRMVTMNVIGALEKIGLAPQGSRQVTEALEDAAVNLVAGGKKKLFTPMMLFVSRKPE 378          
BLAST of DN618172 vs. ExPASy Swiss-Prot
Match: ERG6_KLULA (Sterol 24-C-methyltransferase OS=Kluyveromyces lactis GN=ERG6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.774e-11
Identity = 34/63 (53.97%), Postives = 45/63 (71.43%), Query Frame = -1
Query:  301 RLTSVGRFVTRNRVKALEFVGLAPKGSQRVQDFLEKAAEGLVAGGRKEIFTPMYFFLARKPQQ 489
            R + +GR  T + V   E +GLAPKGS  V + LE+AA GLVAGG K++FTPM  F+A+KP+Q
Sbjct:  308 RTSRLGRAFTTSMVTVFEKLGLAPKGSVSVTNALEEAAVGLVAGGEKKLFTPMMLFVAKKPEQ 370          
BLAST of DN618172 vs. ExPASy Swiss-Prot
Match: ERG6_CLAL4 (Sterol 24-C-methyltransferase OS=Clavispora lusitaniae (strain ATCC 42720) GN=ERG6 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.026e-11
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = -1
Query:  307 RLTSVGRFVTRNRVKALEFVGLAPKGSQRVQDFLEKAAEGLVAGGRKEIFTPMYFFLARKP 489
            R + +GR VT N V  +E +GLAPKGS++V   LE AA  LVAGG +++FTPM  ++ARKP
Sbjct:  311 RTSKIGRTVTTNVVGLMEKIGLAPKGSKQVTGALEDAAVNLVAGGEQKLFTPMMLYIARKP 371          
BLAST of DN618172 vs. ExPASy Swiss-Prot
Match: ERG6_PNECA (Sterol 24-C-methyltransferase OS=Pneumocystis carinii GN=erg6 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.742e-11
Identity = 29/61 (47.54%), Postives = 45/61 (73.77%), Query Frame = -1
Query:  307 RLTSVGRFVTRNRVKALEFVGLAPKGSQRVQDFLEKAAEGLVAGGRKEIFTPMYFFLARKP 489
            R+T++G+++  + +  +EF+GL PKGS++V D L  AA+ LV  G+KEIFTPM  ++ RKP
Sbjct:  315 RMTTIGKWLISSFIGLMEFIGLLPKGSKKVNDILLVAADSLVKAGKKEIFTPMQLWVCRKP 375          
BLAST of DN618172 vs. ExPASy Swiss-Prot
Match: ERG6_CANAL (Sterol 24-C-methyltransferase OS=Candida albicans GN=ERG6 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.742e-11
Identity = 31/61 (50.82%), Postives = 43/61 (70.49%), Query Frame = -1
Query:  307 RLTSVGRFVTRNRVKALEFVGLAPKGSQRVQDFLEKAAEGLVAGGRKEIFTPMYFFLARKP 489
            R + +GRF+T   V  +E +GLAPKGS++V   LE AA  LV GGR+++FTPM  ++ RKP
Sbjct:  311 RTSRIGRFITTESVGLMEKIGLAPKGSKQVTHALEDAAVNLVEGGRQKLFTPMMLYVVRKP 371          
The following BLAST results are available for this feature:
BLAST of DN618172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SMT1_ARATH2.470e-2175.81Cycloartenol-C-24-methyltransferase OS=Arabidopsis... [more]
SMT1_ORYSJ3.226e-2178.69Cycloartenol-C-24-methyltransferase 1 OS=Oryza sat... [more]
ERG6_YARLI1.605e-1254.84Sterol 24-C-methyltransferase OS=Yarrowia lipolyti... [more]
ERG6_KLULA1.774e-1153.97Sterol 24-C-methyltransferase OS=Kluyveromyces lac... [more]
ERG6_CLAL43.026e-1154.10Sterol 24-C-methyltransferase OS=Clavispora lusita... [more]
ERG6_PNECA6.742e-1147.54Sterol 24-C-methyltransferase OS=Pneumocystis cari... [more]
ERG6_CANAL6.742e-1150.82Sterol 24-C-methyltransferase OS=Candida albicans ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02D08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618172 ID=DN618172; Name=DN618172; organism=Citrus sinensis; type=EST; length=489bp
TTTTTTTTTTTTTTTTTGGGATAAAAATATTACGTTTGTCGGAAGAAGGT
CGCAACATATTTTGTTAAAGTACAAATGTCTCCCTGTTTGAAAGGGTATA
AAAGGAAAAAGACAGAACTGGTCCAGACCTAAAACTAAACAAAGAGGAAA
TAACAAAAAACAAATCAAATGGCACAAAATGACTCCCGGGGTGATAAAAC
ATAAACATATTAAATTAAGAAAATAGATAATAGAAATTGCTCGAAACTAA
GTCCTCCGCCCAAGATTCGCAACTGAAGCTACTCATTTTACAGATCAGCC
TTGTTGTGGCTTGCGGGCCAAAAAGAAATACATTGGCGTGAAAATCTCTT
TCCTCCCGCCTGCAACCAATCCTTCTGCTGCCTTCTCCAGAAAATCTTGA
ACCCTTTGACTTCCCTTTGGGGCTAGTCCCACAAATTCTAGGGCTTTCAC
CCTATTTCTAGTCACAAAACGTCCAACTGATGTTAGGCG
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