DN618170

Overview
NameDN618170
Unique NameDN618170
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of DN618170 vs. ExPASy Swiss-Prot
Match: TRXB2_ARATH (Thioredoxin reductase 2 OS=Arabidopsis thaliana GN=NTR2 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.560e-12
Identity = 33/38 (86.84%), Postives = 36/38 (94.74%), Query Frame = -2 
Query:  509 VQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSHEDKSE 622
            VQDKKYRQA+TAAGTGCMAAL+AEHYLQEIGS E KS+
Sbjct:  346 VQDKKYRQAITAAGTGCMAALDAEHYLQEIGSQEGKSD 383
[Close]
BLAST of DN618170 vs. ExPASy Swiss-Prot
Match: TRXB1_ARATH (Thioredoxin reductase 1 OS=Arabidopsis thaliana GN=NTR1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 7.932e-12
Identity = 32/38 (84.21%), Postives = 36/38 (94.74%), Query Frame = -2 
Query:  509 VQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSHEDKSE 622
            VQDKKYRQA+TAAGTGCMAAL+AEHYLQEIGS + KS+
Sbjct:  296 VQDKKYRQAITAAGTGCMAALDAEHYLQEIGSQQGKSD 333
The following BLAST results are available for this feature:
BLAST of DN618170 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRXB2_ARATH3.560e-1286.84Thioredoxin reductase 2 OS=Arabidopsis thaliana GN... [more]
TRXB1_ARATH7.932e-1284.21Thioredoxin reductase 1 OS=Arabidopsis thaliana GN... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02D07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618170 ID=DN618170; Name=DN618170; organism=Citrus sinensis; type=EST; length=623bp
CCCCCCCTTTTTTTTTTTTTCTCAATATCAAATCTACCCACAAGCTACAG
CAAGTTTTAGTTTGAAGTAGCAAATCATCTCATACGAGTAAGTTTTTATG
AGAAGATTTGGGCGAGTCTGCCAGTAGTAGATGGCCCTCCAATATTATTA
ATGGTTGAAATCTTAACAATGTCATACCAGGCTTCATCTAGGAAATTTCT
AATTGTTAAATATCAATAGATTTATGATGACAATAAGGTAAAGAATAATA
TATTCTTAAAAAATTCCAACCAACAATTACATTCTAAAATGCAGCACTAA
TACCAACTTAAAACAAATTCCTTATCCAATTAGTTTTTCCAACCAACTAT
TGGAAGCCAATAAATAAGTCACCAAGACAGTACTGATTCATCACTTGAAT
TGGTCGAGAAAAGGCCTTCTTCATTCAGAGGTAGATTTAGATCAAGTTTG
CATGTAGACTATTCTGCTTTCATCATATCCCAGCCCTGCCATTATCCTAC
AGTGAAGATTCACTCTTATCCTCGTGAGATCCTATCTCTTGCAAGTAATG
CTCAGCTTCCAAGGCTGCCATGCACCCAGTGCCGGCGGCGGTAACAGCCT
GCCTGTACTTCTTATCCTGAACA
back to top