DN618165

Overview
NameDN618165
Unique NameDN618165
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2088 contig Csv1_Contig2088:115..671. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618165 vs. ExPASy Swiss-Prot
Match: TPPC2_BOVIN (Trafficking protein particle complex subunit 2 OS=Bos taurus GN=TRAPPC2 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.446e-32
Identity = 66/138 (47.83%), Postives = 96/138 (69.57%), Query Frame = 2
Query:   80 MATTACFIIVSRNEIPIYEAE---VGSAAKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKYL 484
            M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S I SS FD KV+ L +K+L
Sbjct:    1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHL 138          
BLAST of DN618165 vs. ExPASy Swiss-Prot
Match: TPPC2_PONAB (Trafficking protein particle complex subunit 2 OS=Pongo abelii GN=TRAPPC2 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.888e-32
Identity = 66/138 (47.83%), Postives = 96/138 (69.57%), Query Frame = 2
Query:   80 MATTACFIIVSRNEIPIYEAE---VGSAAKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKYL 484
            M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S I SS FD KV+ L +K+L
Sbjct:    1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSPIRSSAFDRKVQFLGKKHL 138          
BLAST of DN618165 vs. ExPASy Swiss-Prot
Match: TPPC2_MOUSE (Trafficking protein particle complex subunit 2 OS=Mus musculus GN=Trappc2 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.888e-32
Identity = 66/138 (47.83%), Postives = 96/138 (69.57%), Query Frame = 2
Query:   80 MATTACFIIVSRNEIPIYEAEV---GSAAKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKYL 484
            M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S I SS FD KV+ L +K+L
Sbjct:    1 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHL 138          
BLAST of DN618165 vs. ExPASy Swiss-Prot
Match: TPPC2_HUMAN (Trafficking protein particle complex subunit 2 OS=Homo sapiens GN=TRAPPC2 PE=1 SV=3)

HSP 1 Score: 138.658 bits (348), Expect = 1.888e-32
Identity = 66/138 (47.83%), Postives = 96/138 (69.57%), Query Frame = 2
Query:   80 MATTACFIIVSRNEIPIYEAE---VGSAAKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKYL 484
            M+ +  F+IV  ++ P++E E    G A  ++D   L+QFI HAALD+V +  W ++ M+LK +D+FN+  VS +VTAGH RF++LHD R +DGIK+FF +V++LYIK  +NP Y P S I SS FD KV+ L +K+L
Sbjct:    1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSPIRSSAFDRKVQFLGKKHL 138          
BLAST of DN618165 vs. ExPASy Swiss-Prot
Match: TRS20_SCHPO (Transport protein particle 20 kDa subunit OS=Schizosaccharomyces pombe GN=trs20 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.561e-31
Identity = 64/135 (47.41%), Postives = 94/135 (69.63%), Query Frame = 2
Query:   89 TACFIIVSRNEIPIYEAEVGSAAKREDAA---QLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKYL 484
            TA   I+   + P+YE E+G   ++ D +    L+QFI+H++LDIV  L WT++A ++K ID+F+++ +S YVT  + RFMLLH +++ D IK FFQE+HELYIK L++P Y P   I S  FD KVR++AR+YL
Sbjct:    2 TAYAAIIGTKDNPVYELEMGPINEKLDRSLNSHLNQFIVHSSLDIVDQLQWTSNAFYMKTIDQFHEMYISAYVTPSNMRFMLLHQNQSADNIKLFFQELHELYIKTLMSPFYQPNQPIRSQAFDLKVRSIARRYL 136          
BLAST of DN618165 vs. ExPASy Swiss-Prot
Match: TPPC2_DICDI (Trafficking protein particle complex subunit 2 OS=Dictyostelium discoideum GN=trappc2 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.308e-30
Identity = 61/132 (46.21%), Postives = 93/132 (70.45%), Query Frame = 2
Query:   86 TTACFIIVSRNEIPIYEAEVGSAAKREDAAQLHQFILHAALDIVQDLAWTTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSRNDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKY 481
            +T  F+I+ +N+ P+YE E     ++++   L Q+I H +LDIV++  W ++ M+LK ID+FN + +S +VTAGH +F+LLH+ +++D IK+FF EVH+LY+KILLNP Y     ITS+ FD KVR +  KY
Sbjct:    2 STFTFLIIGKNDNPLYEIEFPITVQKKETYVL-QYIAHGSLDIVEEHVWKSNNMYLKIIDKFNKVQISSFVTAGHIKFLLLHEKKDEDAIKNFFVEVHDLYLKILLNPFYEYNKPITSTAFDAKVRKIGTKY 132          
BLAST of DN618165 vs. ExPASy Swiss-Prot
Match: TRS20_YEAST (Transport protein particle 20 kDa subunit OS=Saccharomyces cerevisiae GN=TRS20 PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.126e-19
Identity = 55/169 (32.54%), Postives = 86/169 (50.89%), Query Frame = 2
Query:   98 FIIVSRNEIPIYEAEVGSAAKRE----DAAQLHQFILHAALDIVQDLAW-----------------------------TTSAMFLKAIDRFNDLVVSVYVTAGHTRFMLLHDSR-------NDDGIKSFFQEVHELYIKILLNPLYLPGSRITSSHFDTKVRALARKYL 484
            F I+ + + P+YE E  +A   +    D  +L+ FILHA+LDIV+DL W                              T   +L  +D F  L ++ Y++    +F+++H +        +D+ ++SF+QEVHELY+K L+NP Y     I S  FD++VR LARK+L
Sbjct:    5 FAIIGKKDNPVYEIEFTNAENPQGFPQDLKELNPFILHASLDIVEDLQWQINPTSQLNGNGGNGSNGGGGFLRSRAVNNTDNCYLGKVDHFYGLAITAYISYSGMKFVMIHGNSANSSVVIDDNNMRSFYQEVHELYVKTLMNPFYKITDPIRSPAFDSRVRTLARKHL 173          
The following BLAST results are available for this feature:
BLAST of DN618165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TPPC2_BOVIN1.446e-3247.83Trafficking protein particle complex subunit 2 OS=... [more]
TPPC2_PONAB1.888e-3247.83Trafficking protein particle complex subunit 2 OS=... [more]
TPPC2_MOUSE1.888e-3247.83Trafficking protein particle complex subunit 2 OS=... [more]
TPPC2_HUMAN1.888e-3247.83Trafficking protein particle complex subunit 2 OS=... [more]
TRS20_SCHPO3.561e-3147.41Transport protein particle 20 kDa subunit OS=Schiz... [more]
TPPC2_DICDI2.308e-3046.21Trafficking protein particle complex subunit 2 OS=... [more]
TRS20_YEAST3.126e-1932.54Transport protein particle 20 kDa subunit OS=Sacch... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02D04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618165 ID=DN618165; Name=DN618165; organism=Citrus sinensis; type=EST; length=557bp
CTTCGTTCTCCGTCGCCGGAACCACCGCGTCGCCACCGATTTCAACTGCA
ACTCGTCAATCGTATTGCGACGGAGGAGGATGGCAACAACAGCTTGTTTT
ATTATTGTGAGCAGGAATGAGATTCCGATATATGAAGCTGAAGTTGGCTC
TGCTGCTAAAAGAGAAGATGCTGCTCAGCTGCATCAGTTCATATTACATG
CTGCTCTGGATATTGTTCAGGACCTTGCATGGACTACCAGTGCTATGTTC
TTGAAAGCAATTGACAGGTTCAATGACTTGGTGGTATCAGTATACGTTAC
AGCTGGTCATACACGATTTATGCTACTTCACGACTCTAGGAATGATGATG
GGATCAAGAGCTTTTTCCAAGAGGTCCATGAGCTCTATATAAAGATTCTT
CTTAATCCACTCTACTTGCCCGGTTCCCGGATCACATCATCTCATTTTGA
TACAAAAGTTCGCGCGCTTGCAAGAAAGTATCTGTAGGTGCTAAGTCATT
CTGCCGGAGATGAACACAGCTGTTGAAGTTTTGGGGATTGACCTCCGAAG
TTTCTAT
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