DN618163

Overview
NameDN618163
Unique NameDN618163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length544
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN618163_ssr88 microsatellite DN618163_ssr88:88..97. BLAST: Citrus ESTs to Prunus persica proteins V1
DN618163_ssr98 microsatellite DN618163_ssr98:98..111. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11156 contig Csv1_Contig11156:61..604. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618163 vs. ExPASy Swiss-Prot
Match: WRK65_ARATH (Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 7.910e-33
Identity = 62/85 (72.94%), Postives = 77/85 (90.59%), Query Frame = 3
Query:  291 YNDMMKMTSTSSPKK-RRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIRGSPYPRGYYRCSSSKGCPARKQVERS 542
            +N M  + S+ SPK+ RR+++KRV++VP+KE+EGSR KG++ PPSDSWAWRKYGQKPI+GSPYPRGYYRCSS+KGCPARKQVERS
Sbjct:   30 FNGMKALISSHSPKRSRRSVEKRVVNVPMKEMEGSRHKGDTTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSTKGCPARKQVERS 114          
BLAST of DN618163 vs. ExPASy Swiss-Prot
Match: WRK69_ARATH (Probable WRKY transcription factor 69 OS=Arabidopsis thaliana GN=WRKY69 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.696e-32
Identity = 64/93 (68.82%), Postives = 76/93 (81.72%), Query Frame = 3
Query:  291 YNDMMKMTSTS---------SPKKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIRGSPYPRGYYRCSSSKGCPARKQVERS 542
            YND++  + +S         +PKKRR ++KRV+SVPI +VEGS+ +GE  PPSDSWAWRKYGQKPI+GSPYPRGYYRCSSSKGCPARKQVERS
Sbjct:   18 YNDVVPESPSSCEDSKISKPTPKKRRNVEKRVVSVPIADVEGSKSRGEVYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERS 110          
BLAST of DN618163 vs. ExPASy Swiss-Prot
Match: WRK35_ARATH (Probable WRKY transcription factor 35 OS=Arabidopsis thaliana GN=WRKY35 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.159e-22
Identity = 48/71 (67.61%), Postives = 55/71 (77.46%), Query Frame = 3
Query:  330 KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIRGSPYPRGYYRCSSSKGCPARKQVERS 542
            K+R++  K+V+ +P      SR  GE  P SD WAWRKYGQKPI+GSPYPRGYYRCSSSKGC ARKQVERS
Sbjct:  186 KRRKSQAKKVVCIPAPAAMNSRSSGEVVP-SDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERS 255          
BLAST of DN618163 vs. ExPASy Swiss-Prot
Match: WRK14_ARATH (Probable WRKY transcription factor 14 OS=Arabidopsis thaliana GN=WRKY14 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 6.282e-22
Identity = 47/71 (66.20%), Postives = 55/71 (77.46%), Query Frame = 3
Query:  330 KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIRGSPYPRGYYRCSSSKGCPARKQVERS 542
            K+R++  K+V+ +P      SR  GE  P SD WAWRKYGQKPI+GSP+PRGYYRCSSSKGC ARKQVERS
Sbjct:  188 KRRKSQAKKVVCIPAPAAMNSRSSGEVVP-SDLWAWRKYGQKPIKGSPFPRGYYRCSSSKGCSARKQVERS 257          
BLAST of DN618163 vs. ExPASy Swiss-Prot
Match: WRK29_ARATH (Probable WRKY transcription factor 29 OS=Arabidopsis thaliana GN=WRKY29 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.448e-18
Identity = 45/82 (54.88%), Postives = 59/82 (71.95%), Query Frame = 3
Query:  297 DMMKMTSTSSPKKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIRGSPYPRGYYRCSSSKGCPARKQVERS 542
            D ++++ + S K ++  QKRV+    ++V+   L       SD+WAWRKYGQKPI+GSPYPR YYRCSSSKGC ARKQVER+
Sbjct:  103 DHIRISESKSKKSKKNQQKRVV----EQVKEENLL------SDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERN 174          
BLAST of DN618163 vs. ExPASy Swiss-Prot
Match: WRK22_ARATH (WRKY transcription factor 22 OS=Arabidopsis thaliana GN=WRKY22 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.187e-18
Identity = 43/77 (55.84%), Postives = 53/77 (68.83%), Query Frame = 3
Query:  312 TSTSSPKKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIRGSPYPRGYYRCSSSKGCPARKQVERS 542
            ++TS  K+R+   K+V  V  + +            SD WAWRKYGQKPI+GSPYPRGYYRCS+SKGC ARKQVER+
Sbjct:  103 SNTSRSKRRKIQHKKVCHVAAEALN-----------SDVWAWRKYGQKPIKGSPYPRGYYRCSTSKGCLARKQVERN 168          
BLAST of DN618163 vs. ExPASy Swiss-Prot
Match: WRKY7_ARATH (Probable WRKY transcription factor 7 OS=Arabidopsis thaliana GN=WRKY7 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.091e-17
Identity = 45/87 (51.72%), Postives = 58/87 (66.67%), Query Frame = 3
Query:  303 MKMTSTSSP-------KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIRGSPYPRGYYRCSSSKGCPARKQVERS 542
            +K    SSP       KKR++  KRVI VP    + + +      PSD ++WRKYGQKPI+GSP+PRGYY+CSS +GCPARK VER+
Sbjct:  241 LKRRCNSSPSSRCHCSKKRKSRVKRVIRVPAVSSKMADI------PSDEFSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERA 321          
BLAST of DN618163 vs. ExPASy Swiss-Prot
Match: WRK15_ARATH (Probable WRKY transcription factor 15 OS=Arabidopsis thaliana GN=WRKY15 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.731e-17
Identity = 40/71 (56.34%), Postives = 52/71 (73.24%), Query Frame = 3
Query:  330 KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIRGSPYPRGYYRCSSSKGCPARKQVERS 542
            KKR+  Q+R+I VP    + S +      P D ++WRKYGQKPI+GSP+PRGYY+CSS +GCPARK VER+
Sbjct:  216 KKRKIKQRRIIRVPAISAKMSDV------PPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERA 280          
BLAST of DN618163 vs. ExPASy Swiss-Prot
Match: WRK27_ARATH (Probable WRKY transcription factor 27 OS=Arabidopsis thaliana GN=WRKY27 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.947e-17
Identity = 44/71 (61.97%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  330 KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIRGSPYPRGYYRCSSSKGCPARKQVERS 542
            +KR+  QKR I    +E   S          D WAWRKYGQKPI+GSPYPR YYRCSSSKGC ARKQVERS
Sbjct:  145 RKRKNQQKRTICHVTQENLSS----------DLWAWRKYGQKPIKGSPYPRNYYRCSSSKGCLARKQVERS 205          
BLAST of DN618163 vs. ExPASy Swiss-Prot
Match: WRK21_ARATH (Probable WRKY transcription factor 21 OS=Arabidopsis thaliana GN=WRKY21 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 8.786e-16
Identity = 39/70 (55.71%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  330 KKRRAMQKRVISVPIKEVEGSRLKGESAPPSDSWAWRKYGQKPIRGSPYPRGYYRCSSSKGCPARKQVER 539
            KKR+   +R I VP    + + +      P D ++WRKYGQKPI+GSPYPRGYY+CSS +GCPARK VER
Sbjct:  289 KKRKHRVRRSIRVPAISNKVADI------PPDDYSWRKYGQKPIKGSPYPRGYYKCSSMRGCPARKHVER 352          
The following BLAST results are available for this feature:
BLAST of DN618163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
WRK65_ARATH7.910e-3372.94Probable WRKY transcription factor 65 OS=Arabidops... [more]
WRK69_ARATH6.696e-3268.82Probable WRKY transcription factor 69 OS=Arabidops... [more]
WRK35_ARATH2.159e-2267.61Probable WRKY transcription factor 35 OS=Arabidops... [more]
WRK14_ARATH6.282e-2266.20Probable WRKY transcription factor 14 OS=Arabidops... [more]
WRK29_ARATH1.448e-1854.88Probable WRKY transcription factor 29 OS=Arabidops... [more]
WRK22_ARATH7.187e-1855.84WRKY transcription factor 22 OS=Arabidopsis thalia... [more]
WRKY7_ARATH2.091e-1751.72Probable WRKY transcription factor 7 OS=Arabidopsi... [more]
WRK15_ARATH2.731e-1756.34Probable WRKY transcription factor 15 OS=Arabidops... [more]
WRK27_ARATH7.947e-1761.97Probable WRKY transcription factor 27 OS=Arabidops... [more]
WRK21_ARATH8.786e-1655.71Probable WRKY transcription factor 21 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02D03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618163 ID=DN618163; Name=DN618163; organism=Citrus sinensis; type=EST; length=544bp
CCCATTTTCCATTTCGTCTTCCGCTCATCATCAAACATTAATCTCCGCCA
CGTTCCCCTTTCTCTCTCTATCACTCTTTTTAATTATACACACACACATA
TATATATATATAATTTAGGATACATAGGACGTCGCCGGGCGGCGATCAAC
GTTGAAGATAAGTATAGAGTAGAGGGGTTTCAGGTATGGACGGCAGGTTC
AACAGCAACAGCAACCCATTTACTGGTGAGCAAGAAGAAAATGATACGAC
GCCGGAGAACAGCTCCGAATCCCCACCTTCTTCTTCCACTTATAACGACA
TGATGAAGATGACCTCTACTTCTTCCCCTAAGAAAAGGCGAGCTATGCAG
AAGAGAGTAATATCAGTGCCAATCAAGGAGGTGGAGGGATCAAGACTGAA
AGGGGAGAGCGCCCCACCCTCCGATTCCTGGGCTTGGCGAAAATACGGCC
AGAAACCCATCAGAGGCTCTCCTTATCCGAGAGGATATTACAGATGTAGC
AGCTCGAAAGGCTGCCCGGCAAGAAAACAAGTGGAGCGAAGCAG
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