DN618162

Overview
NameDN618162
Unique NameDN618162
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length554
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN618162_ssr442 microsatellite DN618162_ssr442:442..459. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11156 contig Csv1_Contig11156:589..1142. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN618162 vs. ExPASy Swiss-Prot
Match: WRK65_ARATH (Probable WRKY transcription factor 65 OS=Arabidopsis thaliana GN=WRKY65 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.130e-29
Identity = 77/167 (46.11%), Postives = 99/167 (59.28%), Query Frame = -3 
Query:   94 VERSSVDPSMLLITYSCEHNHPWPLPSTSRNXXXXXHNSKAAKPDRDXXXXXXXXXXXXXXXXEKFTDLADHDNALMT---------TSADEFTWFGEMETTTSTILESPIFADRSQ---SDCDSLSMFFPMREEDESLFADLGELPECSMVFRRHRN--LGPEVQI 552
            VERS  DP+M+LITY+ EHNHPWPL S++RN        K  +P+ +                    +  + DN  M          +  DEF WF EMETT+STILESPIF+   +   S  D +++FFPM EEDESLFADLGELPECS+VF RHR+  +G +V+I
Sbjct:  111 VERSRDDPTMILITYTSEHNHPWPLTSSTRNGPKPKPEPKP-EPEPEVEP-----------------EAEEEDNKFMVLGRGIETTPSCVDEFAWFTEMETTSSTILESPIFSSEKKTAVSGADDVAVFFPMGEEDESLFADLGELPECSVVF-RHRSSVVGSQVEI 258
[Close]
BLAST of DN618162 vs. ExPASy Swiss-Prot
Match: WRK69_ARATH (Probable WRKY transcription factor 69 OS=Arabidopsis thaliana GN=WRKY69 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.902e-14
Identity = 55/150 (36.67%), Postives = 77/150 (51.33%), Query Frame = -3 
Query:  124 VERSSVDPSMLLITYSCEHNHPWPLPSTSRNXXXXXHNS---KAAKPDRDXXXXXXXXXXXXXXXXEKFTDLADHDNALMT----TSADEFTWFGEMETTTSTILESPIFADRSQSDCDSLSMFFPMREEDESLFADLGELPECSMVFRR 552
            VERS VDPS L+ITY+C+HNHP+  PS+S N      +S   K AK + +                    DL+  D+ L+     +   EF WF +   ++S+   S  F D +     S+      +EEDESLF DLG+LP+C+ VFRR
Sbjct:  107 VERSRVDPSKLMITYACDHNHPF--PSSSANTKSHHRSSVVLKTAKKEEEYEEEEEELTVTAAEEPPAGLDLSHVDSPLLLGGCYSEIGEFGWFYDASISSSS--GSSNFLDVTLERGFSVG-----QEEDESLFGDLGDLPDCASVFRR 247
The following BLAST results are available for this feature:
BLAST of DN618162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
WRK65_ARATH1.130e-2946.11Probable WRKY transcription factor 65 OS=Arabidops... [more]
WRK69_ARATH3.902e-1436.67Probable WRKY transcription factor 69 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02D03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618162 ID=DN618162; Name=DN618162; organism=Citrus sinensis; type=EST; length=554bp
TTTTTTTTTTGTTGTCCTGTTGTTATCTATCTCATAGCGCACGATACGCA
CACCGTGGAGTAGTATTAAATTAAGAATGGACACGTGTCAACAGATCTGT
ACCTCTGGTCCCAGATTTCTGTGGCGGCGAAACACCATGGAACACTCCGG
CAATTCGCCGAGATCGGCGAACAGGGACTCGTCCTCTTCCCTCATTGGGA
AGAACATGGACAGGCTGTCACAATCGGATTGACTCCTATCGGCAAAAATG
GGGCTCTCCAGGATGGTGGAGGTTGTCGTTTCCATTTCCCCGAACCACGT
GAATTCATCCGCACTCGTCGTCATGAGCGCGTTATCATGATCAGCAAGAT
CCGTAAACTTCTCTTCGTGTTCCGGCTCGGGCTCGGGTTCGGGTTCGGGC
TCTGGCTCGGGGTCGCGGTCGGGCTTGGCGGCTTTAGAATTGTGGTGGTG
GTGGTGGTGGTTTCTAGAAGTAGAAGGAAGAGGCCAAGGGTGGTTGTGTT
CACAAGAATAGGTGATGAGTAGCATGCTGGGGTCCACGCTGCTTCGCTCC
ACTT
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