DN618161

Overview
NameDN618161
Unique NameDN618161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length526
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN618161_ssr12 microsatellite DN618161_ssr12:12..35. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1115 contig Csv1_Contig1115:123..648. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN618161 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.608e-13
Identity = 47/122 (38.52%), Postives = 62/122 (50.82%), Query Frame = 1 
Query:  109 ALEALNSPTTNTHNHHPFRYEDSWTKRRRSKRPRTDESPPLPPAVAAPTEEEYMALCLIMLARGTTTANTAPAERTPSLAPEQRPQDQFPEPPSLKLSYKCSVCNKAFSSYQALGGHKASHR 474
            A  A++S T+   + H  +    W KR+RS+R R+              EEE +ALCL+ML+RG      AP              + F  P  +   +KCSVC K+FSSYQALGGHK SHR
Sbjct:   23 AAAAVSSATSGEESGHVLQ---GWAKRKRSRRQRS--------------EEENLALCLLMLSRGGKQRVQAPQP------------ESFAAP--VPAEFKCSVCGKSFSSYQALGGHKTSHR 113
The following BLAST results are available for this feature:
BLAST of DN618161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT8.608e-1338.52Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02D02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618161 ID=DN618161; Name=DN618161; organism=Citrus sinensis; type=EST; length=526bp
CTCTTCTCCTGCTCTCTCTCTCTCTCTCTCTCTCTGTCGAAACTCAACAG
ATTCAACCACAAGAGTCGAGAATTCACCTACAAGAAAAGAAAAAAATTCA
CGACTATGGCTCTAGAAGCTCTAAACTCTCCTACAACAAACACCCACAAT
CATCATCCGTTTAGATACGAAGACTCATGGACTAAAAGAAGGCGCTCAAA
ACGACCCCGTACCGACGAGTCCCCACCACTGCCACCAGCAGTAGCAGCTC
CCACAGAAGAAGAGTACATGGCTCTCTGTCTCATCATGCTCGCCCGCGGT
ACCACCACCGCCAACACCGCTCCAGCCGAAAGAACCCCATCCCTGGCGCC
GGAACAGCGGCCGCAGGATCAGTTCCCGGAGCCGCCAAGTTTGAAACTTT
CTTACAAGTGCAGTGTGTGCAACAAGGCTTTCTCTTCTTACCAGGCCCTT
GGTGGGCACAAAGCCAGCCACCGCAAGAACGCTGCTGACGCCTCGGCTTC
TCCCAACGCCGCAGCCGCCAGTGACG
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