DN618158

Overview
NameDN618158
Unique NameDN618158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN618158_ssr283 microsatellite DN618158_ssr283:283..306. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1840 contig Csv1_Contig1840:1403..1892. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_LUPLU (Adenosylhomocysteinase OS=Lupinus luteus GN=SAHH PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.371e-17
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = -3 
Query:  315 EKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 494
            EKS+GKYEKKVYVLPKHLDEKV           LT+L+K+QADYISV  +GPYKP HYRY
Sbjct:  426 EKSSGKYEKKVYVLPKHLDEKVAALHLEKLGAKLTKLSKDQADYISVPVEGPYKPFHYRY 485
[Close]
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH2_ARATH (Adenosylhomocysteinase 2 OS=Arabidopsis thaliana GN=SAHH2 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.371e-17
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = -3 
Query:  315 EKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 494
            EKS+GKYEKKVYVLPKHLDEKV           LT+LTK+Q+DY+S+  +GPYKP+HYRY
Sbjct:  426 EKSSGKYEKKVYVLPKHLDEKVAALHLGKLGARLTKLTKDQSDYVSIPVEGPYKPVHYRY 485
[Close]
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_TOBAC (Adenosylhomocysteinase OS=Nicotiana tabacum GN=SAHH PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.093e-16
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = -3 
Query:  315 EKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 494
            EKS+GKYEKKVYVLPKHLDEKV           LT+L+K+QADYISV  +GPYKP HYRY
Sbjct:  426 EKSSGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485
[Close]
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_PETCR (Adenosylhomocysteinase OS=Petroselinum crispum GN=SAHH PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.093e-16
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = -3 
Query:  315 EKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 494
            EKS+GKYEKKVYVLPKHLDEKV           LT+L+K+QADYISV  +GPYKP HYRY
Sbjct:  426 EKSSGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485
[Close]
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_NICSY (Adenosylhomocysteinase OS=Nicotiana sylvestris GN=SAHH PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.093e-16
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = -3 
Query:  315 EKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 494
            EKS+GKYEKKVYVLPKHLDEKV           LT+L+K+QADYISV  +GPYKP HYRY
Sbjct:  426 EKSSGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485
[Close]
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_CATRO (Adenosylhomocysteinase OS=Catharanthus roseus GN=SAHH PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.093e-16
Identity = 41/60 (68.33%), Postives = 45/60 (75.00%), Query Frame = -3 
Query:  315 EKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 494
            E+ TGKYEKKVYVLPKHLDEKV           LT+LTK+QADYISV  +GPYKP HYRY
Sbjct:  426 ERKTGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTKLTKDQADYISVPIEGPYKPAHYRY 485
[Close]
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_MEDSA (Adenosylhomocysteinase OS=Medicago sativa GN=SAHH PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.436e-16
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = -3 
Query:  315 EKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 494
            EK++GKYEKKVYVLPKHLDEKV           LT+L+K+QADYISV  +GPYKP HYRY
Sbjct:  426 EKTSGKYEKKVYVLPKHLDEKVAALHLGQLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485
[Close]
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_SOLLC (Adenosylhomocysteinase OS=Solanum lycopersicum GN=SAHH PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.155e-16
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = -3 
Query:  315 EKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 494
            E+S+GKYEKKVYVLPKHLDEKV           LT+LTK+QADYI V  +GPYKP HYRY
Sbjct:  426 ERSSGKYEKKVYVLPKHLDEKVAALHLGKFGAKLTKLTKDQADYIYVPVEGPYKPAHYRY 485
[Close]
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_MESCR (Adenosylhomocysteinase OS=Mesembryanthemum crystallinum GN=SAHH PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 5.426e-16
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = -3 
Query:  315 EKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 494
            E+++GKYEKKVYVLPKHLDEKV           LT+L+K+QADYISV  +GPYKP HYRY
Sbjct:  426 ERASGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYISVPVEGPYKPAHYRY 485
[Close]
BLAST of DN618158 vs. ExPASy Swiss-Prot
Match: SAHH_PHASS (Adenosylhomocysteinase OS=Phalaenopsis sp. GN=SAHH PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.579e-15
Identity = 39/60 (65.00%), Postives = 44/60 (73.33%), Query Frame = -3 
Query:  315 EKSTGKYEKKVYVLPKHLDEKVXXXXXXXXXXXLTRLTKEQADYISVSADGPYKPLHYRY 494
            E+++GKYEKKVYVLPKHLDEKV           LT+LT  QADYISV  +GPYKP HYRY
Sbjct:  426 ERASGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTKLTPSQADYISVPVEGPYKPAHYRY 485
The following BLAST results are available for this feature:
BLAST of DN618158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
SAHH_LUPLU8.371e-1768.33Adenosylhomocysteinase OS=Lupinus luteus GN=SAHH P... [more]
SAHH2_ARATH8.371e-1765.00Adenosylhomocysteinase 2 OS=Arabidopsis thaliana G... [more]
SAHH_TOBAC1.093e-1668.33Adenosylhomocysteinase OS=Nicotiana tabacum GN=SAH... [more]
SAHH_PETCR1.093e-1668.33Adenosylhomocysteinase OS=Petroselinum crispum GN=... [more]
SAHH_NICSY1.093e-1668.33Adenosylhomocysteinase OS=Nicotiana sylvestris GN=... [more]
SAHH_CATRO1.093e-1668.33Adenosylhomocysteinase OS=Catharanthus roseus GN=S... [more]
SAHH_MEDSA2.436e-1666.67Adenosylhomocysteinase OS=Medicago sativa GN=SAHH ... [more]
SAHH_SOLLC4.155e-1666.67Adenosylhomocysteinase OS=Solanum lycopersicum GN=... [more]
SAHH_MESCR5.426e-1665.00Adenosylhomocysteinase OS=Mesembryanthemum crystal... [more]
SAHH_PHASS1.579e-1565.00Adenosylhomocysteinase OS=Phalaenopsis sp. GN=SAHH... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02D01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618158 ID=DN618158; Name=DN618158; organism=Citrus sinensis; type=EST; length=496bp
ATATTCCATTCAGTAAACAATAAAGGATAACAAGATGCAGCAAAGCAAGC
AAAACTTAAAACTGCACCAAATACAAAATAATCCAACACGGCCCCATCCA
AAACCTTATTCAAATCCCAAATGGTCTTCAATCAACGGAAACAAATCCGT
TTCTTTCCTCCAACTTTCCCACCACCCAAACACACACTACTACGAAATTT
AAACCTAACATCCTACTACAGATCATCATTGAAAACAATCAAGCCGGCCA
AATATTTTGTTTCTTTCCCTCAAAACATTCACTCTTCTTCTTCTTCTTCT
TCTTCTTCCACTTAGTACCTGTAGTGAAGAGGCTTGTAAGGACCATCGGC
GGACACACTGATGTAGTCAGCCTGCTCCTTGGTGAGCCTGGTGAGCTTAG
CTCCAAGTTTGCCAAGGTGAAGAGCAGCAACCTTTTCATCGAGGTGCTTG
GGCAGAACGTACACCTTCTTCTCGTACTTGCCGGTGCTCTTCTCCT
back to top