DN618150

Overview
NameDN618150
Unique NameDN618150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length622
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN618150_ssr345 microsatellite DN618150_ssr345:345..356. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2047 contig Csv1_Contig2047:178..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618150 vs. ExPASy Swiss-Prot
Match: RL212_ARATH (60S ribosomal protein L21-2 OS=Arabidopsis thaliana GN=RPL21E PE=2 SV=1)

HSP 1 Score: 283.108 bits (723), Expect = 7.786e-76
Identity = 131/145 (90.34%), Postives = 140/145 (96.55%), Query Frame = -1
Query:  188 RKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 622
            RKKGYIPLSTYLRT+K+GDYVDVKVNGA+HKGMPHKFYHGRTGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEFKLRKK+ND LKADAKARGE ISTKRQPKGPKPGFMVEG TLETVTPIPYDVVNDLKGGY
Sbjct:   20 RKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAKARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164          
BLAST of DN618150 vs. ExPASy Swiss-Prot
Match: RL211_ARATH (60S ribosomal protein L21-1 OS=Arabidopsis thaliana GN=RPL21A PE=2 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 1.328e-75
Identity = 131/145 (90.34%), Postives = 139/145 (95.86%), Query Frame = -1
Query:  188 RKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 622
            RKKGYIPLSTYLRT+K+GDYVDVKVNGA+HKGMPHKFYHGRTGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC EEFKLRKKKNDELKA AKA GE ISTKRQPKGPKPGFMVEG TLETVTPIPYDVVNDLKGGY
Sbjct:   20 RKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGRTGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAKANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164          
BLAST of DN618150 vs. ExPASy Swiss-Prot
Match: RL21_CYAPA (60S ribosomal protein L21 OS=Cyanophora paradoxa GN=RPL21 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.875e-37
Identity = 82/139 (58.99%), Postives = 101/139 (72.66%), Query Frame = -1
Query:  215 RKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAK-ARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 622
            +  G + LSTYL  +KIG+YVDV  N AVHKGMP K+YHGRTG VWNVTKRAIGVEINK+V +RIIKKRIHVR++HV+ S C + F  R K+ND++K DA  A+  V STKR P  PK G ++  +G   ET   IPY+
Sbjct:   20 KTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGRTGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAHVAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158          
BLAST of DN618150 vs. ExPASy Swiss-Prot
Match: RL21A_YEAST (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae GN=RPL21A PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.449e-37
Identity = 72/138 (52.17%), Postives = 101/138 (73.19%), Query Frame = -1
Query:  215 RKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 622
            RK G + LSTYL+ YK+GD VD+K NG++ KGMPHKFY G+TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R K N   +A+AKA+G  +  KRQP  P+   +V  EG   +T+ P+PY+
Sbjct:   20 RKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157          
BLAST of DN618150 vs. ExPASy Swiss-Prot
Match: RL21B_YEAST (60S ribosomal protein L21-B OS=Saccharomyces cerevisiae GN=RPL21B PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 5.455e-37
Identity = 71/138 (51.45%), Postives = 101/138 (73.19%), Query Frame = -1
Query:  215 RKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 622
            RK G + +STYL+ YK+GD VD+K NG++ KGMPHKFY G+TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C +EF  R K N   +A+AKA+G  +  KRQP  P+   +V  EG   +T+ P+PY+
Sbjct:   20 RKHGAVHMSTYLKIYKVGDIVDIKANGSIQKGMPHKFYQGKTGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAKAQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157          
BLAST of DN618150 vs. ExPASy Swiss-Prot
Match: RL21_DICDI (60S ribosomal protein L21 OS=Dictyostelium discoideum GN=rpl21 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 3.536e-36
Identity = 72/140 (51.43%), Postives = 94/140 (67.14%), Query Frame = -1
Query:  209 RKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLE--TVTPIPYDVV 622
            R  G +  +T+LRT+++GDYVD+K  G VHKGMPHKFYHGRTGRVWNVT RA+GV INK+VG RII K+IHVR EHV+PS        R ++N +   +AK  G+ +  +R P  PK GF V     E   V P+ Y+++
Sbjct:   20 RNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGRTGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAKKAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELL 159          
BLAST of DN618150 vs. ExPASy Swiss-Prot
Match: RL21B_SCHPO (60S ribosomal protein L21-B OS=Schizosaccharomyces pombe GN=rpl21b PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 7.877e-36
Identity = 72/138 (52.17%), Postives = 99/138 (71.74%), Query Frame = -1
Query:  215 RKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVT--PIPYD 622
            R+ G I LSTYL+TYK+GD VD+KVNGAV KGMPHK+YHG+TG V+NVT+ ++GV I K VGNR ++KR++VR+EHV+ S+C ++F  R K N+  + +AKA+G+ +  +RQP  P     V     E VT  P+ YD
Sbjct:   20 REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157          
BLAST of DN618150 vs. ExPASy Swiss-Prot
Match: RL21A_SCHPO (60S ribosomal protein L21-A OS=Schizosaccharomyces pombe GN=rpl21a PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.877e-36
Identity = 72/138 (52.17%), Postives = 99/138 (71.74%), Query Frame = -1
Query:  215 RKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMVEGATLETVT--PIPYD 622
            R+ G I LSTYL+TYK+GD VD+KVNGAV KGMPHK+YHG+TG V+NVT+ ++GV I K VGNR ++KR++VR+EHV+ S+C ++F  R K N+  + +AKA+G+ +  +RQP  P     V     E VT  P+ YD
Sbjct:   20 REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAKAQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157          
BLAST of DN618150 vs. ExPASy Swiss-Prot
Match: RL21_HUMAN (60S ribosomal protein L21 OS=Homo sapiens GN=RPL21 PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.486e-34
Identity = 69/138 (50.00%), Postives = 95/138 (68.84%), Query Frame = -1
Query:  215 RKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 622
            RK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G  +  KRQP  P+    V   G   E + PIPY+
Sbjct:   20 RKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYE 157          
BLAST of DN618150 vs. ExPASy Swiss-Prot
Match: RL21_CHILA (60S ribosomal protein L21 OS=Chinchilla lanigera GN=RPL21 PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.486e-34
Identity = 69/138 (50.00%), Postives = 95/138 (68.84%), Query Frame = -1
Query:  215 RKKGYIPLSTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFKLRKKKNDELKADAKARGEVISTKRQPKGPKPGFMV--EGATLETVTPIPYD 622
            RK G +PL+TY+R YK GD VD+K  G V KGMPHK YHG+TGRV+NVT+ A+G+ +NKQV  +I+ KRI+VR+EH++ S+  + F  R K+ND+ K +AK +G  +  KRQP  P+    V   G   E + PIPY+
Sbjct:   20 RKHGVVPLATYMRIYKKGDIVDIKGMGTVQKGMPHKCYHGKTGRVYNVTQHAVGIVVNKQVKGKILAKRINVRIEHIKHSKSRDSFLKRVKENDQKKKEAKEKGTWVQLKRQPAPPREAHFVRTNGKEPELLEPIPYE 157          
The following BLAST results are available for this feature:
BLAST of DN618150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL212_ARATH7.786e-7690.3460S ribosomal protein L21-2 OS=Arabidopsis thalian... [more]
RL211_ARATH1.328e-7590.3460S ribosomal protein L21-1 OS=Arabidopsis thalian... [more]
RL21_CYAPA1.875e-3758.9960S ribosomal protein L21 OS=Cyanophora paradoxa G... [more]
RL21A_YEAST2.449e-3752.1760S ribosomal protein L21-A OS=Saccharomyces cerev... [more]
RL21B_YEAST5.455e-3751.4560S ribosomal protein L21-B OS=Saccharomyces cerev... [more]
RL21_DICDI3.536e-3651.4360S ribosomal protein L21 OS=Dictyostelium discoid... [more]
RL21B_SCHPO7.877e-3652.1760S ribosomal protein L21-B OS=Schizosaccharomyces... [more]
RL21A_SCHPO7.877e-3652.1760S ribosomal protein L21-A OS=Schizosaccharomyces... [more]
RL21_HUMAN1.486e-3450.0060S ribosomal protein L21 OS=Homo sapiens GN=RPL21... [more]
RL21_CHILA1.486e-3450.0060S ribosomal protein L21 OS=Chinchilla lanigera G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618150 ID=DN618150; Name=DN618150; organism=Citrus sinensis; type=EST; length=622bp
CCCCTTTTTTTTCGGAAAACATCTCTTGTTTCTAATATAAAATGAAGATT
AAAAATAAACATCTCTGCAATTGCAGTTCCTCTCCAAAAACAAAACTAAT
AAGGATGAAAATACATCCAAATAAGACCATGTCCAGAAAAGTCTGCAACA
AGTAACAAAACAGCAACAATACCAAAAAGATAACCTAGTAACCACCCTTA
AGATCATTGACGACATCATAAGGAATGGGAGTGACAGTTTCCAATGTTGC
ACCTTCCACCATGAAACCTGGTTTAGGGCCCTTTGGCTGCCTCTTTGTAC
TGATGACCTCACCTCTTGCCTTAGCATCTGCCTTGAGTTCATCATTCTTC
TTCTTCCTCAGCTTGAACTCCTCGGTACACCTTGAAGGTTGAACATGCTC
CACGCGAACATGAATCCTCTTCTTGATGATCCTGTTACCAACCTGCTTGT
TAATCTCGACGCCGATAGCGCGCTTGGTGACATTCCAGACACGGCCGGTA
CGTCCATGGTAGAACTTGTGGGGCATACCTTTGTGAACGGCGCCGTTCAC
TTTGACGTCAACGTAGTCGCCGATTTTGTAAGTCCTAAGGTAAGTGGACA
AGGGGATGTAACCCTTCTTTCT
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