DN618149

Overview
NameDN618149
Unique NameDN618149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length503
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_ARATH (Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.231e-27
Identity = 59/87 (67.82%), Postives = 75/87 (86.21%), Query Frame = 2
Query:  242 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            LTQD+LK++AA KAV++V+SGM LGLGTGSTA   VD+IG+LL+ G+L +IVGIPTSK+T+EQA SL IPL+ LD HP +DL+IDGA
Sbjct:   31 LTQDELKRIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLENIVGIPTSKKTQEQALSLGIPLSDLDAHPVIDLSIDGA 117          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_DESAA (Ribose-5-phosphate isomerase A OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rpiA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.189e-21
Identity = 49/86 (56.98%), Postives = 67/86 (77.91%), Query Frame = 2
Query:  245 TQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            +QD LKK AA+KAV+Y++SGM +GLG+GSTA F +  I +L+K G+L+DIVGIP+S  TEE A+SL IPL   ++H  +D+ IDGA
Sbjct:    3 SQDALKKQAAEKAVEYLESGMVVGLGSGSTATFAIHAIARLMKEGKLKDIVGIPSSTPTEEVARSLGIPLVGFEEHAVIDVTIDGA 88          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_ROSCS (Ribose-5-phosphate isomerase A OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=rpiA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.315e-20
Identity = 47/81 (58.02%), Postives = 65/81 (80.25%), Query Frame = 2
Query:  260 KKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            ++ AA++A+DYV+SGMA+GLGTGSTA+F++  +   L  G L+ +VG+PTS++T   A+ L IPLTTLD HPSLDLA+DGA
Sbjct:    7 RRRAAERALDYVESGMAIGLGTGSTASFMLRGLAARLADGRLQRVVGVPTSEQTAVLARELGIPLTTLDRHPSLDLALDGA 87          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_PARL1 (Ribose-5-phosphate isomerase A OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rpiA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.215e-19
Identity = 48/87 (55.17%), Postives = 62/87 (71.26%), Query Frame = 2
Query:  242 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            +  DD KK AA +A+++VK GM LG+GTGSTA   V  +G+ +K G   DIVG+PTS+RT + A SL IPLT LDD P LD+ +DGA
Sbjct:    1 MNADDQKKAAAVRALEFVKPGMKLGMGTGSTAEHFVRALGEKVKAG--LDIVGVPTSERTAKLAASLGIPLTNLDDTPHLDITVDGA 85          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_SYNJA (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpiA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 9.423e-19
Identity = 48/84 (57.14%), Postives = 62/84 (73.81%), Query Frame = 2
Query:  251 DDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            D+LK+ AA  A   V+SGM +GLGTGSTAAF V  + Q ++   L+  +G+PTS+RT EQA+SL IPL TL++ P LDLAIDGA
Sbjct:    5 DELKQAAAQAAAQKVQSGMVVGLGTGSTAAFAVGALAQRMQKEGLQ-FIGVPTSERTAEQARSLGIPLATLEEQPRLDLAIDGA 87          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_LACPL (Ribose-5-phosphate isomerase A OS=Lactobacillus plantarum GN=rpiA PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.108e-18
Identity = 45/87 (51.72%), Postives = 62/87 (71.26%), Query Frame = 2
Query:  242 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            + QD LK+L   KAV+Y++ GM +GLGTGST  F+VD +G+ +K   L +IVG+ TS RT  QAK+L IP+ ++D+   LDL IDGA
Sbjct:    1 MNQDQLKQLVGQKAVEYIQDGMQVGLGTGSTVKFMVDALGERVKNEHL-NIVGVSTSDRTAAQAKALGIPMKSVDEVDHLDLTIDGA 86          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_THEEB (Ribose-5-phosphate isomerase A OS=Thermosynechococcus elongatus (strain BP-1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.361e-17
Identity = 45/82 (54.88%), Postives = 57/82 (69.51%), Query Frame = 2
Query:  257 LKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            +K++ A  A D V+SGM +GLGTGST AFV+  +G  L+ GEL +IVG+PTS +    AK   IPL TLDD   LD+AIDGA
Sbjct:    9 MKQVVAKAAADRVQSGMVVGLGTGSTTAFVIQFLGDRLRKGELSNIVGVPTSFQASVLAKKYGIPLVTLDDVEKLDIAIDGA 90          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_METRJ (Ribose-5-phosphate isomerase A OS=Methylobacterium radiotolerans (strain ATCC 27329 / DSM 1819 / JCM 2831) GN=rpiA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.321e-17
Identity = 47/83 (56.63%), Postives = 60/83 (72.29%), Query Frame = 2
Query:  254 DLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            DL++ AA +A+D V+ GM LGLGTGSTAA  V  +G+ ++ G   DIVG+PTS+ T  QA+SL I L TLD+ P LDL IDGA
Sbjct:    5 DLRRAAAARALDLVEPGMRLGLGTGSTAAAFVALLGERVRAG--LDIVGVPTSEATRAQAESLGIRLATLDEQPELDLTIDGA 85          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_PEDPA (Ribose-5-phosphate isomerase A OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w) GN=rpiA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.031e-17
Identity = 43/87 (49.43%), Postives = 64/87 (73.56%), Query Frame = 2
Query:  242 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            + Q++LKKL  ++AV +++ GM +GLGTGST  F+VD +G+ +K   L +IVG+PTS RT EQA+SL I + ++D+   +DL IDGA
Sbjct:    1 MDQNELKKLVGEEAVKFIEDGMTVGLGTGSTVKFMVDALGERVKNENL-NIVGVPTSDRTAEQARSLGINVKSVDEVDHIDLTIDGA 86          
BLAST of DN618149 vs. ExPASy Swiss-Prot
Match: RPIA_LACRJ (Ribose-5-phosphate isomerase A OS=Lactobacillus reuteri (strain JCM 1112) GN=rpiA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.959e-17
Identity = 39/87 (44.83%), Postives = 63/87 (72.41%), Query Frame = 2
Query:  242 LTQDDLKKLAADKAVDYVKSGMALGLGTGSTAAFVVDKIGQLLKTGELRDIVGIPTSKRTEEQAKSLNIPLTTLDDHPSLDLAIDGA 502
            + Q+ LK+    ++V Y+KSGM +GLGTGST  ++VD++G+ ++ G+++DI+G+ TS RT +QA+ L I +  +DD   +DL IDGA
Sbjct:    1 MDQNALKEQTGKESVKYIKSGMIVGLGTGSTVKYMVDELGKQVQEGKIKDIIGVTTSNRTAKQARDLGITIKDIDDVDHIDLTIDGA 87          
The following BLAST results are available for this feature:
BLAST of DN618149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 155
Match NameE-valueIdentityDescription
RPIA_ARATH3.231e-2767.82Probable ribose-5-phosphate isomerase OS=Arabidops... [more]
RPIA_DESAA1.189e-2156.98Ribose-5-phosphate isomerase A OS=Desulfatibacillu... [more]
RPIA_ROSCS1.315e-2058.02Ribose-5-phosphate isomerase A OS=Roseiflexus cast... [more]
RPIA_PARL17.215e-1955.17Ribose-5-phosphate isomerase A OS=Parvibaculum lav... [more]
RPIA_SYNJA9.423e-1957.14Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_LACPL6.108e-1851.72Ribose-5-phosphate isomerase A OS=Lactobacillus pl... [more]
RPIA_THEEB1.361e-1754.88Ribose-5-phosphate isomerase A OS=Thermosynechococ... [more]
RPIA_METRJ2.321e-1756.63Ribose-5-phosphate isomerase A OS=Methylobacterium... [more]
RPIA_PEDPA3.031e-1749.43Ribose-5-phosphate isomerase A OS=Pediococcus pent... [more]
RPIA_LACRJ3.959e-1744.83Ribose-5-phosphate isomerase A OS=Lactobacillus re... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618149 ID=DN618149; Name=DN618149; organism=Citrus sinensis; type=EST; length=503bp
AGCCAAAGCCATCCAAAACACACACAGATAGATTGATCAACAACAACTTC
TCACAACTCACCTCTCATTTATTTTCCTCTCAAACTCACCCCATCACCAC
CACAGCCTCCGCCCAAGAAAAATGACTTCTTTATCCTTCCTCCCCACTCT
CCATCTCTCCACCTCCGCTCACTTCCTCCCACGCGCCCCCAAATCCCTCA
GACCACGCGCCATTTCCATCAAAGCCCAGGCCGTCCCGGCCCTCACCCAA
GACGACTTGAAGAAGCTCGCCGCCGACAAGGCCGTTGACTACGTCAAATC
CGGCATGGCCCTCGGCCTCGGTACCGGCTCCACCGCCGCCTTCGTCGTCG
ACAAGATCGGCCAACTCTTGAAAACCGGCGAGTTAAGGGACATCGTCGGA
ATCCCAACTTCAAAACGCACGGAAGAGCAAGCCAAGTCGCTTAACATTCC
CTTAACCACACTTGACGATCACCCATCACTGGATTTGGCCATTGACGGCG
CCG
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