DN618148

Overview
NameDN618148
Unique NameDN618148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1199 contig Csv1_Contig1199:155..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_ARATH (Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.843e-44
Identity = 85/144 (59.03%), Postives = 110/144 (76.39%), Query Frame = -3
Query:  205 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEVKSK 636
            DP LNLVKGRGG+LLREKM+E ASK FVV+ D+SK+V  +GGSKLA+PVE+V FCWK+   +L+ L    GCEA LR GE GK ++TDN NYI+D++ E  + D  +    I +L GVVEHG+FLDMA+ VIIAG+ GV++K+K
Sbjct:  121 DPFLNLVKGRGGSLLREKMIEGASKKFVVIVDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLRLGEKGKAFVTDNGNYIVDMHVEEDMGDLGAVSDAILRLPGVVEHGMFLDMASTVIIAGELGVKIKNK 264          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_SYNJA (Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpiA PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.085e-27
Identity = 67/137 (48.91%), Postives = 90/137 (65.69%), Query Frame = -3
Query:  217 LNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 627
            LNL+KG GGALLREK+VEA++   +++AD SK V+ L G++  +PVEVV+F WK  L R++     LGC+A LR    G PY+TD  +YI+D  F  PI +      ++    GVVEHGLF+ MAT  IIAG  G+E
Sbjct:   95 LNLIKGAGGALLREKLVEASAAELIIIADASKKVAHL-GTRFPVPVEVVRFGWKTTLARVE----ALGCQAVLRRTAEGDPYLTDEQHYILDCQF-GPIANPAKLAEQLKGTVGVVEHGLFIGMATEAIIAGPEGIE 225          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_BACWK (Ribose-5-phosphate isomerase A OS=Bacillus weihenstephanensis (strain KBAB4) GN=rpiA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.860e-25
Identity = 63/138 (45.65%), Postives = 87/138 (63.04%), Query Frame = -3
Query:  217 ELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 630
            +L L+KG GGALLREK+V  +SK  +++ADESKLVS LG     +P+E++ F WK    R+Q     LGCE  LR  ++ +P+ITDN N IID  F   I +     TE+  + GVVE GLF++M +  II  K G++
Sbjct:   89 DLQLIKGGGGALLREKIVATSSKELIIIADESKLVSHLG--TFPLPIEIISFSWKQTEKRIQ----SLGCETHLRM-KDSRPFITDNGNLIIDCIFPNKILNPNDTHTELKMITGVVETGLFINMKSKAIIGTKNGIK 219          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_BACCR (Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=rpiA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.123e-24
Identity = 61/140 (43.57%), Postives = 88/140 (62.86%), Query Frame = -3
Query:  217 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 636
            D  L L+KG GGALLREK+V ++SK  +++ADESKLV+ LG     +P+E++ F WK    + ++  + LGC+  LR  +N + YITDN N IID  F   I + V   T++  + GVVE GLF+ M +  II  K G++
Sbjct:   86 DSNLQLIKGGGGALLREKIVASSSKKLIIIADESKLVTHLG--TFPLPIEIIPFSWK----QTENKIQSLGCQTTLRL-KNNETYITDNNNMIIDCIFPNHISNPVHLHTQLKMITGVVETGLFISMTSTAIIGTKNGIK 218          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_BACSK (Ribose-5-phosphate isomerase A OS=Bacillus clausii (strain KSM-K16) GN=rpiA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.268e-24
Identity = 69/139 (49.64%), Postives = 91/139 (65.47%), Query Frame = -3
Query:  220 PELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGK-PYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 633
            P L L+KG GG+LLREK+V AA+K  VV+ADESKLV  LG  KL  PVE++ F W+   +R++     LG  A LR  + GK P+++DN N+I+D  F   I+D  S   ++ KL GVVE GLFLDMA   I+A K G+
Sbjct:   88 PGLMLLKGGGGSLLREKLVAAAAKRLVVLADESKLVEELGAFKL--PVEIIPFGWETTAMRIE----ALGGVASLR--QTGKSPFVSDNHNWILDCDFGN-IRDPYSLHEKVKKLVGVVETGLFLDMACEAIVASKNGI 217          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_DESAA (Ribose-5-phosphate isomerase A OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rpiA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.613e-23
Identity = 63/139 (45.32%), Postives = 84/139 (60.43%), Query Frame = -3
Query:  220 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 636
            DP+LNL+KG GGALLREK+V  A+K  +++ DESK+   L G+  A+PVEVV F        L+     LG +  +RE + GK + TDN N I+D  F  P+ D V  G  + +  GVVEHGLFL     VI+AG  G+
Sbjct:   92 DPDLNLIKGGGGALLREKVVAQATKKNIIIVDESKISDKL-GTIFALPVEVVPFATASETRFLE----SLGAKVTVRENQLGKAFKTDNHNRILDADF-GPMDDAVKIGMALSQRAGVVEHGLFLGTTALVIVAGADGI 224          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_BACC1 (Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ATCC 10987) GN=rpiA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.163e-23
Identity = 60/140 (42.86%), Postives = 87/140 (62.14%), Query Frame = -3
Query:  217 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVE 636
            D  L+L+KG GGALLREK+V ++SK  +++ADESKLV+ LG     +PVE++ F WK    ++Q     LGC+  LR  +N + +ITDN N IID  F   I +  +    +  + GVVE GLF++M +  II  K G++
Sbjct:   86 DSNLHLIKGGGGALLREKIVASSSKELLIIADESKLVTHLG--TFPLPVEIIPFSWKQTESKIQ----SLGCQTTLRL-KNNETFITDNNNMIIDCVFPHNITNPANLHNHLKMITGVVETGLFVNMTSKAIIGTKNGIQ 218          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_RHOPT (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.050e-23
Identity = 62/141 (43.97%), Postives = 86/141 (60.99%), Query Frame = -3
Query:  220 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 636
            D  L+L+KG GGALLREK+V AAS   +V+ADESKLV  LG  +  +P+EV+ F        LQ+ F   GC  E KLR G++G  ++TD  ++I+D      I D       +  + GVVEHGLF+ MA+ V++AG  G+
Sbjct:   89 DHHLDLIKGGGGALLREKIVAAASDRMIVIADESKLVDTLG--RFPLPIEVIPFGLGATRRALQNAFTAAGCDGELKLRPGKDGHAFVTDGGHWILDAQLGR-IPDAPRLAQLLSVIPGVVEHGLFVGMASTVVLAGADGI 226          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_RHOPA (Ribose-5-phosphate isomerase A OS=Rhodopseudomonas palustris GN=rpiA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.050e-23
Identity = 62/141 (43.97%), Postives = 86/141 (60.99%), Query Frame = -3
Query:  220 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGC--EAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGV 636
            D  L+L+KG GGALLREK+V AAS   +V+ADESKLV  LG  +  +P+EV+ F        LQ+ F   GC  E KLR G++G  ++TD  ++I+D      I D       +  + GVVEHGLF+ MA+ V++AG  G+
Sbjct:   89 DHHLDLIKGGGGALLREKIVAAASDRMIVIADESKLVDTLG--RFPLPIEVIPFGLGATRRALQNAFTAAGCDGELKLRPGKDGHAFVTDGGHWILDAQLGR-IPDAPRLAQLLSVIPGVVEHGLFVGMASTVVLAGADGI 226          
BLAST of DN618148 vs. ExPASy Swiss-Prot
Match: RPIA_STRTD (Ribose-5-phosphate isomerase A OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=rpiA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.373e-22
Identity = 66/141 (46.81%), Postives = 84/141 (59.57%), Query Frame = -3
Query:  214 DPELNLVKGRGGALLREKMVEAASKSFVVVADESKLVSGLGGSKLAMPVEVVQFCWKYNLVRLQDLFRELGCEAKLREGENGKPYITDNFNYIIDLYFETPIKDGVSAGTEIGKLEGVVEHGLFLDMATAVIIAGKTGVEV 636
            DP+LN +KG GGALL EK+V   +K ++ V DESK+V  LG  KL  PVEVVQ    Y   RL   F   G +   R  E G  ++TD  N+IIDL     I + V+ G E+  + GVVEHGLF  M   VI+AGK GV++
Sbjct:   88 DPQLNGIKGGGGALLMEKIVATPTKKYIWVVDESKMVDQLGAFKL--PVEVVQ----YGADRLYLDFESKGYKPSFRVTEQGDRFVTDMKNFIIDLDL-GKINNPVALGDELKAMTGVVEHGLFNGMVNKVIVAGKDGVKI 221          
The following BLAST results are available for this feature:
BLAST of DN618148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 305
Match NameE-valueIdentityDescription
RPIA_ARATH2.843e-4459.03Probable ribose-5-phosphate isomerase OS=Arabidops... [more]
RPIA_SYNJA1.085e-2748.91Ribose-5-phosphate isomerase A OS=Synechococcus sp... [more]
RPIA_BACWK3.860e-2545.65Ribose-5-phosphate isomerase A OS=Bacillus weihens... [more]
RPIA_BACCR1.123e-2443.57Ribose-5-phosphate isomerase A OS=Bacillus cereus ... [more]
RPIA_BACSK4.268e-2449.64Ribose-5-phosphate isomerase A OS=Bacillus clausii... [more]
RPIA_DESAA3.613e-2345.32Ribose-5-phosphate isomerase A OS=Desulfatibacillu... [more]
RPIA_BACC16.163e-2342.86Ribose-5-phosphate isomerase A OS=Bacillus cereus ... [more]
RPIA_RHOPT8.050e-2343.97Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA_RHOPA8.050e-2343.97Ribose-5-phosphate isomerase A OS=Rhodopseudomonas... [more]
RPIA_STRTD1.373e-2246.81Ribose-5-phosphate isomerase A OS=Streptococcus th... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618148 ID=DN618148; Name=DN618148; organism=Citrus sinensis; type=EST; length=638bp
TTTTTCGAGCAACGGAACAATTTATTTATGTTTTATTCCACATCTGCCCA
ATTCAAGATACAAAATTTCTACTGAGAACCCGCATTGCCAAATCTAACAT
TTAAACTAAAATTAAGTCCAAAAAAAAATATCAGAGTAATGAACAACAAG
AAGAAGGACAAATTATAAAAAACCAAATTTTTTAAATCCTCACCGCCATC
ATCACTTGCTCTTAACTTCAACACCAGTCTTCCCAGCTATGATCACAGCA
GTCGCCATATCCAAAAACAACCCGTGTTCCACAACTCCTTCGAGCTTCCC
AATCTCCGTCCCAGCTGAAACCCCGTCTTTAATGGGCGTCTCGAAATACA
AATCGATAATGTAGTTAAAATTATCAGTGATATAAGGCTTCCCGTTTTCC
CCTTCTCTAAGCTTGGCCTCACAACCCAGTTCCCTGAACAAGTCTTGAAG
CCTAACCAAATTGTATTTCCAGCAAAACTGAACCACTTCAACTGGCATCG
CAAGCTTACTCCCACCGAGTCCGCTCACTAATTTACTCTCATCAGCCACA
ACAACGAAGCTTTTCGACGCAGCTTCCACCATCTTCTCTCTCAAAAGCGC
CCCGCCTCGGCCTTTAACGAGGTTCAATTCTGGGTCAA
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