DN618147

Overview
NameDN618147
Unique NameDN618147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length530
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5695 contig Csv1_Contig5695:270..799. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618147 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.764e-40
Identity = 84/122 (68.85%), Postives = 96/122 (78.69%), Query Frame = 3
Query:    6 TQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 371
            T+PPK+   STKFSD+ AFSGPAPERINGRLAMIGFVAA+ VE++KGQ +  QLS GGVAWFLGT          P F+GVSVESKS   M+SDAE WNGR AM+GLVALA TEFVKG++LV
Sbjct:   78 TRPPKM---STKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of DN618147 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.773e-32
Identity = 68/120 (56.67%), Postives = 90/120 (75.00%), Query Frame = 3
Query:   15 PKLPRISTKFS-DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 371
            P    ++TK + D+F+F G APERINGR AMIGFVAA+ VEL+ G+DVF+Q+ +GGV WFL T          P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALA TE+VKG  L+
Sbjct:   78 PNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of DN618147 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.753e-29
Identity = 70/129 (54.26%), Postives = 85/129 (65.89%), Query Frame = 3
Query:    6 TQPPKLPRISTKFS-----DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLS--DGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 371
            T  P  P+  TK +     D  AFSGPAPERINGRLAM+GFVAAL+VE ++G  +  Q+     G+AWFL T          PL +G SVESKS G  ++DAELWNGRFAM+GLVALA TEF+ G+  V
Sbjct:  101 TTIPAAPKPVTKKANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of DN618147 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.289e-29
Identity = 65/124 (52.42%), Postives = 79/124 (63.71%), Query Frame = 3
Query:    3 STQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 371
            S  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T          PL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G+  +
Sbjct:   47 SAPPPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of DN618147 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.904e-29
Identity = 64/121 (52.89%), Postives = 78/121 (64.46%), Query Frame = 3
Query:   12 PPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXXPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 371
            PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T          PL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G+  +
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITGTPFI 165          
BLAST of DN618147 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.903e-14
Identity = 55/121 (45.45%), Postives = 64/121 (52.89%), Query Frame = 3
Query:   12 PPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXXPLFKGVSVESKSD--GFMTSDAELWNGRFAMMGLVALAVTEFVKGSTL 368
            PP  P   T  ++V  FSG APE INGRLAM+GFVAAL  ELS G+ V  QL D      L T          P F       K D  G  T DAE+ NGRFAM+G  A+ V E ++G  L
Sbjct:   58 PPPTPAAPT-VTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQGIAL 171          
The following BLAST results are available for this feature:
BLAST of DN618147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA3.764e-4068.85Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL3.773e-3256.67Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU1.753e-2954.26High molecular mass early light-inducible protein ... [more]
ELI9_HORVU2.289e-2952.42Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU3.904e-2952.89Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA7.903e-1445.45Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02C19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618147 ID=DN618147; Name=DN618147; organism=Citrus sinensis; type=EST; length=530bp
AATCAACTCAGCCACCAAAGCTACCGCGTATAAGCACGAAGTTCTCTGAC
GTGTTTGCGTTCAGCGGGCCGGCACCGGAGAGGATAAACGGGAGGCTTGC
GATGATTGGGTTCGTGGCTGCATTGGCGGTGGAGCTATCCAAGGGTCAGG
ATGTGTTTGCCCAGTTATCAGACGGTGGAGTTGCCTGGTTCTTGGGGACC
AGTGTTCTGCTTTCGGTTGCGTCCCTGGTTCCTTTGTTTAAAGGTGTCAG
CGTGGAGTCTAAATCGGATGGGTTCATGACTTCGGATGCTGAGTTGTGGA
ATGGGAGGTTCGCTATGATGGGTCTTGTTGCTTTGGCTGTCACTGAGTTT
GTTAAAGGCAGTACCCTTGTTTAGTTAAGTCCAATTTTCCAGTGATATGC
GGACTGCAGAGTCTTGAAATGATAACAAGACCCTATTCTTAATACTTGAA
GCGCACGTCATGTTTCTTCCGTGGCTAATTATTGTGTATGAATTATGGTG
GTGTTGTATGTAAATCTCTGTTTTCCCATG
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