DN618146

Overview
NameDN618146
Unique NameDN618146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length584
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5695 contig Csv1_Contig5695:267..850. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618146 vs. ExPASy Swiss-Prot
Match: ELI_PEA (Early light-induced protein, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 4.625e-40
Identity = 84/122 (68.85%), Postives = 97/122 (79.51%), Query Frame = -3
Query:  211 TQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 576
            T+PPK+   STKFSD+ AFSGPAPERINGRLAMIGFVAA+ VE++KGQ +  QLS GGVAWFLGT         +P F+GVSVESKS   M+SDAE WNGR AM+GLVALA TEFVKG++LV
Sbjct:   78 TRPPKM---STKFSDLMAFSGPAPERINGRLAMIGFVAAMGVEIAKGQGLSEQLSGGGVAWFLGTSVLLSLASLIPFFQGVSVESKSKSIMSSDAEFWNGRIAMLGLVALAFTEFVKGTSLV 196          
BLAST of DN618146 vs. ExPASy Swiss-Prot
Match: DS22_CRAPL (Desiccation stress protein DSP-22, chloroplastic OS=Craterostigma plantagineum GN=DSP-22 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.635e-32
Identity = 68/120 (56.67%), Postives = 91/120 (75.83%), Query Frame = -3
Query:  211 PKLPRISTKFS-DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 567
            P    ++TK + D+F+F G APERINGR AMIGFVAA+ VEL+ G+DVF+Q+ +GGV WFL T         +P+++G+S E+K++GF  SDAE+WNGRFAM+GLVALA TE+VKG  L+
Sbjct:   78 PNRTEVTTKRTVDLFSFDGLAPERINGRSAMIGFVAAVGVELATGRDVFSQVFNGGVMWFLLTSAVLVLATLIPIYRGLSPEAKNNGFWNSDAEIWNGRFAMIGLVALAFTEYVKGGPLI 197          
BLAST of DN618146 vs. ExPASy Swiss-Prot
Match: ELI5_HORVU (High molecular mass early light-inducible protein HV58, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.153e-29
Identity = 70/129 (54.26%), Postives = 86/129 (66.67%), Query Frame = -3
Query:  211 TQPPKLPRISTKFS-----DVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLS--DGGVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 576
            T  P  P+  TK +     D  AFSGPAPERINGRLAM+GFVAAL+VE ++G  +  Q+     G+AWFL T         +PL +G SVESKS G  ++DAELWNGRFAM+GLVALA TEF+ G+  V
Sbjct:  101 TTIPAAPKPVTKKANPSVWDALAFSGPAPERINGRLAMVGFVAALSVEAARGGGLLDQVGMWSSGLAWFLATAGVFSVASLLPLLQGQSVESKSSGIWSADAELWNGRFAMLGLVALAATEFITGAPFV 229          
BLAST of DN618146 vs. ExPASy Swiss-Prot
Match: ELI9_HORVU (Low molecular mass early light-inducible protein HV90, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.812e-29
Identity = 66/124 (53.23%), Postives = 80/124 (64.52%), Query Frame = -3
Query:  211 STQPPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 579
            S  PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T         VPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G+  +
Sbjct:   47 SAPPPNKPKASTSIWDEMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAVLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMLGLVALAATEIITGAPFI 170          
BLAST of DN618146 vs. ExPASy Swiss-Prot
Match: ELI6_HORVU (Low molecular mass early light-inducible protein HV60, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.797e-29
Identity = 65/121 (53.72%), Postives = 79/121 (65.29%), Query Frame = -3
Query:  211 PPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDG-GVAWFLGTXXXXXXXXXVPLFKGVSVESKSDGFMTSDAELWNGRFAMMGLVALAVTEFVKGSTLV 570
            PP  P+ ST   D  AFSGPAPERINGRLAM+GFV ALAVE  +G  + +QL  G G AWF  T         VPL +G S E ++   M ++AELWNGRFAM+GLVALA TE + G+  +
Sbjct:   45 PPNKPKASTSIWDAMAFSGPAPERINGRLAMVGFVTALAVEAGRGDGLLSQLGSGTGQAWFAYTVAMLSMASLVPLLQGESAEGRAGAIMNANAELWNGRFAMIGLVALAATEIITGTPFI 165          
BLAST of DN618146 vs. ExPASy Swiss-Prot
Match: CBR_DUNBA (Carotene biosynthesis-related protein CBR, chloroplastic OS=Dunaliella bardawil GN=CBR PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 9.710e-14
Identity = 55/121 (45.45%), Postives = 65/121 (53.72%), Query Frame = -3
Query:  214 PPKLPRISTKFSDVFAFSGPAPERINGRLAMIGFVAALAVELSKGQDVFAQLSDGGVAWFLGTXXXXXXXXXVPLFKGVSVESKSD--GFMTSDAELWNGRFAMMGLVALAVTEFVKGSTL 570
            PP  P   T  ++V  FSG APE INGRLAM+GFVAAL  ELS G+ V  QL D      L T         +P F       K D  G  T DAE+ NGRFAM+G  A+ V E ++G  L
Sbjct:   58 PPPTPAAPT-VTEVMGFSG-APEIINGRLAMLGFVAALGAELSTGESVLTQLGDQPTLIAL-TFVLFSAASLIPAF----ARRKGDAMGPFTPDAEMTNGRFAMIGFAAMLVYEGIQGIAL 171          
The following BLAST results are available for this feature:
BLAST of DN618146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
ELI_PEA4.625e-4068.85Early light-induced protein, chloroplastic OS=Pisu... [more]
DS22_CRAPL4.635e-3256.67Desiccation stress protein DSP-22, chloroplastic O... [more]
ELI5_HORVU2.153e-2954.26High molecular mass early light-inducible protein ... [more]
ELI9_HORVU2.812e-2953.23Low molecular mass early light-inducible protein H... [more]
ELI6_HORVU4.797e-2953.72Low molecular mass early light-inducible protein H... [more]
CBR_DUNBA9.710e-1445.45Carotene biosynthesis-related protein CBR, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02C19_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618146 ID=DN618146; Name=DN618146; organism=Citrus sinensis; type=EST; length=584bp
TTTTTTTTTTTTTTTTTCAAACGGAAAAGGGTGATTTATTTAGAGAATTG
GCATGGGAAAACAGAGATTTACATACAACACCACCATAATTCATACACAA
TAATTAGCCACGGAAGAAACATGACGTGCGCTTCAAGTATTAAGAATAGG
GTCTTGTTATCATTTCAAGACTCTGCAGTCCGCATATCACTGGAAAATTG
GACTTAACTAAACAAGGGTACTGCCTTTAACAAACTCAGTGACAGCCAAA
GCAACAAGACCCATCATAGCGAACCTCCCATTCCACAACTCAGCATCCGA
AGTCATGAACCCATCCGATTTAGACTCCACGCTGACACCTTTAAACAAAG
GAACCAGGGACGCAACCGAAAGCAGAACACTGGTCCCCAAGAACCAGGCA
ACTCCACCGTCTGATAACTGGGCAAACACATCCTGACCCTTGGATAGCTC
CACCGCCAATGCAGCCACGAACCCAATCATCGCAAGCCTCCCGTTTATCC
TCTCCGGTGCCGGCCCGCTGAACGCAAACACGTCAGAGAACTTCGTGCTT
ATACGCGGTAGCTTTGGTGGCTGAGTTGATTCCT
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