DN618139

Overview
NameDN618139
Unique NameDN618139
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length441
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618139 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSJ (Hydrophobic protein LTI6B OS=Oryza sativa subsp. japonica GN=LTI6B PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.533e-20
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 3
Query:  129 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLMTILGYIPGIIYAVYAITK 284
            TA C+DIL+A+ILPPLGVFLKFGC  EFWICLL+T LGYIPGIIYA+YAITK
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of DN618139 vs. ExPASy Swiss-Prot
Match: LTI6B_ORYSI (Hydrophobic protein LTI6B OS=Oryza sativa subsp. indica GN=LTI6B PE=3 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 1.533e-20
Identity = 43/52 (82.69%), Postives = 48/52 (92.31%), Query Frame = 3
Query:  129 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLMTILGYIPGIIYAVYAITK 284
            TA C+DIL+A+ILPPLGVFLKFGC  EFWICLL+T LGYIPGIIYA+YAITK
Sbjct:    4 TANCIDILIAIILPPLGVFLKFGCGHEFWICLLLTFLGYIPGIIYAIYAITK 55          
BLAST of DN618139 vs. ExPASy Swiss-Prot
Match: LTI6A_ORYSJ (Hydrophobic protein LTI6A OS=Oryza sativa subsp. japonica GN=LTI6A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.826e-20
Identity = 44/57 (77.19%), Postives = 50/57 (87.72%), Query Frame = 3
Query:  114 MADGSTATCVDILLAVILPPLGVFLKFGCKAEFWICLLMTILGYIPGIIYAVYAITK 284
            MAD STATC+DI+LA+ILPPLGVF KFGC  EFWICLL+T  GY+PGIIYAV+ ITK
Sbjct:    1 MAD-STATCIDIILAIILPPLGVFFKFGCGIEFWICLLLTFFGYLPGIIYAVWVITK 56          
BLAST of DN618139 vs. ExPASy Swiss-Prot
Match: RCI2B_ARATH (Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.891e-19
Identity = 40/53 (75.47%), Postives = 49/53 (92.45%), Query Frame = 3
Query:  126 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLMTILGYIPGIIYAVYAITK 284
            STAT V+I+LA+ILPPLGVFLKFGCK EFWICL++T+ GY+PGI+YA+Y ITK
Sbjct:    2 STATFVEIILAIILPPLGVFLKFGCKVEFWICLILTLFGYLPGILYALYIITK 54          
BLAST of DN618139 vs. ExPASy Swiss-Prot
Match: RCI2A_ARATH (Hydrophobic protein RCI2A OS=Arabidopsis thaliana GN=RCI2A PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.932e-19
Identity = 39/53 (73.58%), Postives = 49/53 (92.45%), Query Frame = 3
Query:  126 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLMTILGYIPGIIYAVYAITK 284
            STAT VDI++A++LPPLGVFL+FGC  EFWICL++T+LGYIPGIIYA+Y +TK
Sbjct:    2 STATFVDIIIAILLPPLGVFLRFGCGVEFWICLVLTLLGYIPGIIYAIYVLTK 54          
BLAST of DN618139 vs. ExPASy Swiss-Prot
Match: OSR8_ORYSJ (Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.485e-15
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 3
Query:  114 MADGSTATCVDILLAVILPPLGVFLKFGC-KAEFWICLLMTILGYIPGIIYAVYAI 278
            MA G   T ++ILLA+ILPPLGVFL+FGC   EF ICLL+TILGY+PGIIYAVY +
Sbjct:    1 MASGRCCTFLEILLAIILPPLGVFLRFGCCSMEFCICLLLTILGYVPGIIYAVYVL 56          
BLAST of DN618139 vs. ExPASy Swiss-Prot
Match: LT02_HORVU (Low temperature-induced protein lt101.2 OS=Hordeum vulgare GN=LT101.2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.485e-15
Identity = 33/51 (64.71%), Postives = 46/51 (90.20%), Query Frame = 3
Query:  126 STATCVDILLAVILPPLGVFLKFGCKAEFWICLLMTILGYIPGIIYAVYAI 278
            ++AT ++++LA+ILPP+GVFL++G   EFWICLL+T+LGYIPGIIYAVY +
Sbjct:    2 ASATFIEVILAIILPPVGVFLRYGLAVEFWICLLLTLLGYIPGIIYAVYVL 52          
BLAST of DN618139 vs. ExPASy Swiss-Prot
Match: LT01_HORVU (Low temperature-induced protein lt101.1 OS=Hordeum vulgare GN=LT101.1 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.642e-14
Identity = 33/50 (66.00%), Postives = 44/50 (88.00%), Query Frame = 3
Query:  129 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLMTILGYIPGIIYAVYAI 278
            +AT ++++LA+ILPP+GVFL++    EFWICLL+TILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of DN618139 vs. ExPASy Swiss-Prot
Match: ESI3_LOPEL (Salt stress-induced hydrophobic peptide ESI3 OS=Lophopyrum elongatum GN=ESI3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.642e-14
Identity = 33/50 (66.00%), Postives = 44/50 (88.00%), Query Frame = 3
Query:  129 TATCVDILLAVILPPLGVFLKFGCKAEFWICLLMTILGYIPGIIYAVYAI 278
            +AT ++++LA+ILPP+GVFL++    EFWICLL+TILGYIPGIIYAVY +
Sbjct:    3 SATVLEVILAIILPPVGVFLRYKLGVEFWICLLLTILGYIPGIIYAVYVL 52          
BLAST of DN618139 vs. ExPASy Swiss-Prot
Match: PMP3_DEBHA (Plasma membrane proteolipid 3 OS=Debaryomyces hansenii GN=PMP3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.537e-12
Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 3
Query:  135 TCVDI---LLAVILPPLGVFLKFGCKAEFWICLLMTILGYIPGIIYAVYAITK 284
            TC DI   ++A+ILPPLGVFL+ GC + FWI +++TILGYIPGII+A+Y I K
Sbjct:    4 TCSDIFKIIIAIILPPLGVFLERGCASSFWINIVLTILGYIPGIIHALYVILK 56          
The following BLAST results are available for this feature:
BLAST of DN618139 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
LTI6B_ORYSJ1.533e-2082.69Hydrophobic protein LTI6B OS=Oryza sativa subsp. j... [more]
LTI6B_ORYSI1.533e-2082.69Hydrophobic protein LTI6B OS=Oryza sativa subsp. i... [more]
LTI6A_ORYSJ5.826e-2077.19Hydrophobic protein LTI6A OS=Oryza sativa subsp. j... [more]
RCI2B_ARATH2.891e-1975.47Hydrophobic protein RCI2B OS=Arabidopsis thaliana ... [more]
RCI2A_ARATH4.932e-1973.58Hydrophobic protein RCI2A OS=Arabidopsis thaliana ... [more]
OSR8_ORYSJ1.485e-1569.64Hydrophobic protein OSR8 OS=Oryza sativa subsp. ja... [more]
LT02_HORVU1.485e-1564.71Low temperature-induced protein lt101.2 OS=Hordeum... [more]
LT01_HORVU1.642e-1466.00Low temperature-induced protein lt101.1 OS=Hordeum... [more]
ESI3_LOPEL1.642e-1466.00Salt stress-induced hydrophobic peptide ESI3 OS=Lo... [more]
PMP3_DEBHA1.537e-1262.26Plasma membrane proteolipid 3 OS=Debaryomyces hans... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C15_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618139 ID=DN618139; Name=DN618139; organism=Citrus sinensis; type=EST; length=441bp
AAATAACAAAAGCAGTTACTCAAAACCCTAAGCACTTCTTTAATCAAAGT
TCTTGTTTTTTGACTCTAAATTTTATTTTATTCCATTTTACACTTTTTAA
GAATCAATCAAAGATGGCAGATGGAAGCACAGCAACATGCGTAGATATTC
TCTTGGCTGTTATCTTGCCTCCTCTTGGTGTCTTTCTCAAATTTGGTTGC
AAGGCTGAGTTTTGGATCTGTTTGCTCATGACAATTCTGGGGTATATCCC
TGGAATTATTTATGCTGTTTATGCCATCACCAAGAAGTGATCTCTCGTCT
TCATCTGTAAGTGCCTGTACTCTTTAATTTTGCTCAAAGCTTTTGGAAAT
CTTTTTATGAACTTTTTTTTAATTTATAACCAAGAAAATTGTTAATTTAT
TTACGATTTTACTGAACTTCTGATGATATATATTTACTGAA
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