DN618134

Overview
NameDN618134
Unique NameDN618134
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:994..1526. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN618134 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.844e-27
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = -3 
Query:  355 MIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 531
            MIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL
Sbjct:  287 MIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 345
[Close]
BLAST of DN618134 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.658e-25
Identity = 55/59 (93.22%), Postives = 58/59 (98.31%), Query Frame = -3 
Query:  355 MIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 531
            MIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELIL
Sbjct:  283 MIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELIL 341
[Close]
BLAST of DN618134 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.972e-21
Identity = 49/59 (83.05%), Postives = 53/59 (89.83%), Query Frame = -3 
Query:  355 MIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 531
            MIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+L
Sbjct:  280 MIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVL 338
[Close]
BLAST of DN618134 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.278e-19
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = -3 
Query:  355 MIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 531
            MIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++
Sbjct:  286 MIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMI 344
[Close]
BLAST of DN618134 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.855e-19
Identity = 45/48 (93.75%), Postives = 48/48 (100.00%), Query Frame = -3 
Query:  388 MIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGT 531
            MIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT
Sbjct:  283 MIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT 330
The following BLAST results are available for this feature:
BLAST of DN618134 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
THI4_CITSI4.844e-27100.00Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL2.658e-2593.22Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH3.972e-2183.05Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE1.278e-1979.66Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE4.855e-1993.75Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02C13_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618134 ID=DN618134; Name=DN618134; organism=Citrus sinensis; type=EST; length=533bp
AAGTTATAAACATACAAAGCAAAGAAAAGGGAACAGCCCAAGGGCAGTCT
TACACATAACACAGATAACAAGGACTAGATACGCAACTGCAAATTCACCT
CCGAAAAACTCACAACGGTTTCTTACAAGAGGAGAAAGAAATTAAAATTA
AAGGTTCCATGATGGACCGGAAACAAACACTTTATTCACAAAACCTCACA
ACATTATCTCATTATTCGCATCAACCATCCATCACAACCACCTAAATACA
ACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGATGAGTGATG
ATGCCTGTTATTACCAAATTAAGCATCAGCAGTCTCAGCAGAATCAGCTG
CAGCTAAGATCAGCTCAGGGTGAACGCCTCCCACATATGTACCGTCTAAT
GCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCCTTCTGCCC
CGATATCATCATTGCTCCAAATGTTGGCCCCATTCGAGGAGCACCATCAA
TCTCGGCAACTTCCATGCCGGTAACTATCATAC
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