DN618126

Overview
NameDN618126
Unique NameDN618126
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN618126 vs. ExPASy Swiss-Prot
Match: Y575_SYNY3 (Thylakoid membrane protein slr0575 OS=Synechocystis sp. (strain PCC 6803) GN=slr0575 PE=4 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.639e-20
Identity = 62/147 (42.18%), Postives = 81/147 (55.10%), Query Frame = -2 
Query:  137 YGFPLAVIGMALKYAELKPVPCL--TYSDAQSLRETCATPILKQVRNDVIRFRYGDEQHLDEALKRIFQYGLGGGIPRRSAPVLQMIREEVTEDGKYCLVLVFEAKALKLSDFEKRQAKFTSFFGPGITAEVGKGESENLYEVRLIS 571
            YG PL + G+ALK AELKP+P    T     +LR   ATP   Q+R DV R+RYG E HLDE+L+R     LG        PVL  + E+  E GKY L L F +  + L  ++++Q K   FFGP +   V + E E +  V LIS
Sbjct:   40 YGIPLVLGGLALKAAELKPIPFSQPTSEKIIALRNQLATPTQNQIRKDVTRYRYGQEAHLDESLER-----LGLSPTDEERPVLTSLLEQDWE-GKYVLTLTFTSPFISLETWQEKQEKIAKFFGPDLEVTVAEPE-EKVVTVNLIS 179
The following BLAST results are available for this feature:
BLAST of DN618126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y575_SYNY34.639e-2042.18Thylakoid membrane protein slr0575 OS=Synechocysti... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02C09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618126 ID=DN618126; Name=DN618126; organism=Citrus sinensis; type=EST; length=623bp
TATACATTTGAATCTAGCCATGTACAAAATTTCACGAGGGGATCAAATGT
AAGTAACGAAAGAAAGCCAATACACTGGCAGAATTAGATGAAATCACACA
CACTTTTCATGAAGATGATACATTGGGGCTGGTGTTGGATATAAGTCGAA
CTTCGTATAGATTCTCACTCTCTCCCTTCCCAACTTCAGCTGTGATCCCT
GGCCCAAAGAATGAAGTAAATTTTGCCTGTCTTTTCTCAAAATCTGACAA
CTTCAGTGCTTTTGCCTCAAACACCAAGACCAGACAGTATTTACCATCTT
CGGTGACTTCTTCACGAATCATTTGTAGTACAGGTGCACTCCTCCGTGGA
ATTCCTCCACCCAAGCCATATTGGAAAATCCTTTTCAATGCCTCATCCAG
ATGCTGCTCATCCCCATAACGAAATCTTATAACATCATTCCTGACCTGTT
TAAGGATTGGAGTGGCGCATGTTTCCCTTAAACTTTGAGCATCTGAATAA
GTCAAGCATGGGACTGGTTTCAGTTCTGCATACTTAAGTGCCATTCCAAT
TACGGCGAGAGGGAAGCCATATGTAAGCATTAACGCTGACCATTCAGATC
CGGGGAAAATACTGAAGTAAGCC
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