DN618125

Overview
NameDN618125
Unique NameDN618125
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length500
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618125 vs. ExPASy Swiss-Prot
Match: TMX3_HUMAN (Protein disulfide-isomerase TMX3 OS=Homo sapiens GN=TMX3 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.028e-14
Identity = 41/153 (26.80%), Postives = 83/153 (54.25%), Query Frame = 2
Query:   14 IRVCRLDCVSHRNACSHFRIHSYPTIMFIKGDEDLQFIYHGDRQAEDIVHFSLRVANPPIRPIKDREHLKSLERDGMIFFTFIGDADGELWDSFSTIATKFQPHSYFYHAPLKTAVEHLPEFPKPSVVVHKDGSIYHFERNPNEILNASLARW 472
            ++V ++D  S+ +  S F +  YPTI  +KGD  L + Y G R  +DI+ F+ RV+   IRP+  ++  + +++   +FF ++G  +  L + +   A++   ++YF+ A  +   E++     P+V+V KD + + ++    E  +  L+ W
Sbjct:   77 VKVGKMDATSYSSIASEFGVRGYPTIKLLKGD--LAYNYRGPRTKDDIIEFAHRVSGALIRPLPSQQMFEHMQKRHRVFFVYVG-GESPLKEKYIDAASELIVYTYFFSASEEVVPEYVTLKEMPAVLVFKDETYFVYD----EYEDGDLSSW 222          
BLAST of DN618125 vs. ExPASy Swiss-Prot
Match: TMX3_MOUSE (Protein disulfide-isomerase TMX3 OS=Mus musculus GN=Tmx3 PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 8.972e-14
Identity = 41/152 (26.97%), Postives = 82/152 (53.95%), Query Frame = 2
Query:   14 IRVCRLDCVSHRNACSHFRIHSYPTIMFIKGDEDLQFIYHGDRQAEDIVHFSLRVANPPIRPIKDREHLKSLERDGMIFFTFIGDADGELWDSFSTIATKFQPHSYFYHAPLKTAVEHLPEFPKPSVVVHKDGSIYHFERNPNEILNASLAR 469
            ++V ++D  S+ +  S F +  YPTI  +KGD  L + Y G R  +DI+ F+ RV+   IRP+  ++    + +   +FF +IG  +  L + +   A++   ++YF+ A      E++     P+V+V KD + + ++   +  L++ ++R
Sbjct:   80 VKVGKMDATSYSSIASEFGVRGYPTIKLLKGD--LAYNYRGPRTKDDIIEFAHRVSGALIRPLPSQQMFDHVRKRHRVFFVYIG-GESPLKEKYIDAASELIVYTYFFSASEDVVPEYVTLKEMPAVLVFKDDTYFVYDEYEDGDLSSWISR 228          
BLAST of DN618125 vs. ExPASy Swiss-Prot
Match: TMX3_PONAB (Protein disulfide-isomerase TMX3 OS=Pongo abelii GN=TMX3 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.172e-13
Identity = 41/153 (26.80%), Postives = 83/153 (54.25%), Query Frame = 2
Query:   14 IRVCRLDCVSHRNACSHFRIHSYPTIMFIKGDEDLQFIYHGDRQAEDIVHFSLRVANPPIRPIKDREHLKSLERDGMIFFTFIGDADGELWDSFSTIATKFQPHSYFYHAPLKTAVEHLPEFPKPSVVVHKDGSIYHFERNPNEILNASLARW 472
            ++V ++D  S+ +  S F +  YPTI  +KGD  L + + G R  +DI+ F+ RV+   IRP+  ++  + +++   +FF +IG  +  L + +   A++   ++YF+ A  +   E++     P+V+V KD + + ++    E  +  L+ W
Sbjct:   77 VKVGKMDATSYSSIASEFGVRGYPTIKLLKGD--LAYNHRGPRTKDDIIEFAHRVSGALIRPLPSQQMFEHMQKRHRVFFVYIG-GESPLKEKYIDAASELIVYTYFFSASEEVVPEYVTLKEMPAVLVFKDETYFVYD----EYEDGDLSSW 222          
BLAST of DN618125 vs. ExPASy Swiss-Prot
Match: TMX3_XENLA (Protein disulfide-isomerase TMX3 OS=Xenopus laevis GN=tmx3 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.530e-13
Identity = 43/153 (28.10%), Postives = 81/153 (52.94%), Query Frame = 2
Query:   14 IRVCRLDCVSHRNACSHFRIHSYPTIMFIKGDEDLQFIYHGDRQAEDIVHFSLRVANPPIRPIKDREHLKSLERDGMIFFTFIGDADGELWDSFSTIATKFQPHSYFYHAPLKTAVEHLPEFPKPSVVVHKDGSIYHFERNPNEILNASLARW 472
            IRV ++D   + +  S F +  +PTI  +KGD  + + Y G R  EDIV F+ RVA P IRP+  ++    +++   + F ++G  +  L + F  +A++   ++YF+ A      +++     P+V+V KD + + ++    E  +  L+ W
Sbjct:   77 IRVGKIDATVYSSIASEFGVRGFPTIKALKGD--MAYNYRGPRTKEDIVEFANRVAGPLIRPLPSQQMFDHVKKRHPVLFVYVG-VESTLKEKFIEVASELIVYTYFFSASEDVLPKYVTLNEVPAVLVFKDSTYFVYD----EYEDGDLSSW 222          
The following BLAST results are available for this feature:
BLAST of DN618125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TMX3_HUMAN4.028e-1426.80Protein disulfide-isomerase TMX3 OS=Homo sapiens G... [more]
TMX3_MOUSE8.972e-1426.97Protein disulfide-isomerase TMX3 OS=Mus musculus G... [more]
TMX3_PONAB1.172e-1326.80Protein disulfide-isomerase TMX3 OS=Pongo abelii G... [more]
TMX3_XENLA1.530e-1328.10Protein disulfide-isomerase TMX3 OS=Xenopus laevis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02C08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618125 ID=DN618125; Name=DN618125; organism=Citrus sinensis; type=EST; length=500bp
CCACAATACAAACATTCGTGTTTGTCGGCTGGATTGTGTGTCACATCGGA
ATGCGTGCTCGCATTTCCGAATTCATTCGTACCCTACTATCATGTTTATA
AAAGGAGATGAAGACTTACAGTTCATTTATCATGGTGATCGTCAAGCTGA
GGATATTGTCCACTTCTCATTGCGAGTGGCTAATCCACCGATTCGGCCAA
TTAAAGATCGTGAACATTTGAAAAGTTTGGAAAGAGATGGAATGATATTC
TTTACATTTATTGGGGATGCCGATGGAGAATTATGGGATTCGTTTTCGAC
AATTGCTACAAAATTTCAGCCACATTCGTATTTCTATCATGCTCCATTAA
AAACTGCCGTAGAACACTTGCCAGAATTCCCCAAACCGTCGGTTGTTGTG
CACAAAGACGGTTCAATTTATCACTTTGAAAGAAATCCGAATGAAATTCT
GAATGCTTCATTAGCACGGTGGGGTCAATGAAGAACGATTTCCTATTTTT
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