DN618119

Overview
NameDN618119
Unique NameDN618119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN618119_ssr218 microsatellite DN618119_ssr218:218..229. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5770 contig Csv1_Contig5770:1..603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN618119 vs. ExPASy Swiss-Prot
Match: RBP9X_DROME (Ran-binding proteins 9/10 homolog OS=Drosophila melanogaster GN=RanBPM PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.231e-19
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 3 
Query:  294 VSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVG 602
            +S + L V Y  V     D   V+   P P    +YYFE+ +   G  G + IG T++ F+M R PGW+  S GYHGDDG  +   G G+ +GPTFTT D +G
Sbjct:  433 LSQNNLRVTYKGVGKQHSDAASVRTAYPIPSSCGLYYFEVRIISKGRNGYMGIGLTAQQFRMNRLPGWDKQSYGYHGDDGNSFSSSGNGQTYGPTFTTGDVIG 535
[Close]
BLAST of DN618119 vs. ExPASy Swiss-Prot
Match: RBP10_DANRE (Ran-binding protein 10 OS=Danio rerio GN=ranbp10 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.189e-17
Identity = 40/106 (37.74%), Postives = 59/106 (55.66%), Query Frame = 3 
Query:  285 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVG 602
            ++ +S + L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G
Sbjct:   53 YIGLSQNNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIG 158
[Close]
BLAST of DN618119 vs. ExPASy Swiss-Prot
Match: RBP10_MOUSE (Ran-binding protein 10 OS=Mus musculus GN=Ranbp10 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.027e-17
Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 3 
Query:  285 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVG 602
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G
Sbjct:   93 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIG 198
[Close]
BLAST of DN618119 vs. ExPASy Swiss-Prot
Match: RBP10_HUMAN (Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.027e-17
Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 3 
Query:  285 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVG 602
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G
Sbjct:   65 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIG 170
[Close]
BLAST of DN618119 vs. ExPASy Swiss-Prot
Match: RBP10_BOVIN (Ran-binding protein 10 OS=Bos taurus GN=RANBP10 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.027e-17
Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 3 
Query:  285 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVG 602
            ++ +S   L V Y     +  D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G
Sbjct:   65 YIGLSQGNLRVHYKGHGKNHKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIG 170
[Close]
BLAST of DN618119 vs. ExPASy Swiss-Prot
Match: RANB9_MOUSE (Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.648e-17
Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 3 
Query:  285 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVG 602
            ++ +S + L V Y        D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G
Sbjct:  102 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIG 207
[Close]
BLAST of DN618119 vs. ExPASy Swiss-Prot
Match: RANB9_HUMAN (Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.648e-17
Identity = 40/106 (37.74%), Postives = 58/106 (54.72%), Query Frame = 3 
Query:  285 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVG 602
            ++ +S + L V Y        D   V+A  P P    +YYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G
Sbjct:  177 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGIYYFEVKIVSKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIG 282
[Close]
BLAST of DN618119 vs. ExPASy Swiss-Prot
Match: RANB9_DANRE (Ran-binding protein 9 OS=Danio rerio GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.648e-17
Identity = 41/106 (38.68%), Postives = 58/106 (54.72%), Query Frame = 3 
Query:  285 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVG 602
            ++ +S + L V Y        D   V+A  P P    VYYFE+ +   G  G + IG +++   M R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G
Sbjct:   59 YIGLSQNNLRVHYKGHGKTPKDAASVRATHPIPAACGVYYFEVKIISKGRDGYMGIGLSAQGVNMNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIG 164
[Close]
BLAST of DN618119 vs. ExPASy Swiss-Prot
Match: RANB9_XENLA (Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.823e-16
Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 3 
Query:  285 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVG 602
            +L +S   L V Y        D   V++  P P    ++YFE+ +   G  G + IG +++   + R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G
Sbjct:   32 YLGLSHGNLRVHYKGHGKTSKDAASVRSTHPIPAACGIFYFEVKIISKGRDGYMGIGLSTQGVNLNRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIG 137
[Close]
BLAST of DN618119 vs. ExPASy Swiss-Prot
Match: RANB9_XENTR (Ran-binding protein 9 OS=Xenopus tropicalis GN=ranbp9 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.994e-16
Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 3 
Query:  285 FLVVSPDKLSVKYTSVNLHGHDVGVVQANKPAPVKRLVYYFEIYVEDAGAKGQIAIGFTSESFKMRRQPGWEANSCGYHGDDGLLYRGQGKGEAFGPTFTTNDTVG 602
            +L +S   L V Y        D   V++  P P    ++YFE+ +   G  G + IG +++   + R PGW+ +S GYHGDDG  +   G G+ +GPTFTT D +G
Sbjct:   32 YLGLSHGNLRVHYKGHGKTSKDAASVRSTHPIPAACGIFYFEVKIISKGRDGYMGIGLSTQGVNLSRLPGWDKHSYGYHGDDGHSFCSSGTGQPYGPTFTTGDVIG 137
The following BLAST results are available for this feature:
BLAST of DN618119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
RBP9X_DROME8.231e-1940.78Ran-binding proteins 9/10 homolog OS=Drosophila me... [more]
RBP10_DANRE1.189e-1737.74Ran-binding protein 10 OS=Danio rerio GN=ranbp10 P... [more]
RBP10_MOUSE2.027e-1737.74Ran-binding protein 10 OS=Mus musculus GN=Ranbp10 ... [more]
RBP10_HUMAN2.027e-1737.74Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 ... [more]
RBP10_BOVIN2.027e-1737.74Ran-binding protein 10 OS=Bos taurus GN=RANBP10 PE... [more]
RANB9_MOUSE2.648e-1737.74Ran-binding protein 9 OS=Mus musculus GN=Ranbp9 PE... [more]
RANB9_HUMAN2.648e-1737.74Ran-binding protein 9 OS=Homo sapiens GN=RANBP9 PE... [more]
RANB9_DANRE2.648e-1738.68Ran-binding protein 9 OS=Danio rerio GN=ranbp9 PE=... [more]
RANB9_XENLA3.823e-1635.85Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 ... [more]
RANB9_XENTR4.994e-1635.85Ran-binding protein 9 OS=Xenopus tropicalis GN=ran... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02C04_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618119 ID=DN618119; Name=DN618119; organism=Citrus sinensis; type=EST; length=603bp
TGGCTACCCACCTCGAGGCTGAGGTTCCCAATTTCGCAAGTTACGAACTC
CGAACTCTCCTGCTCATGTATGATTCTTTGAAACAAGTGTAGGGTTTCAC
TTTATGCCAATTCCAAACAATGAGCACAAACAACACTAACAACATTAAAA
ATGAAGATCTCGGCTTGCACTTCCTCGCGCTGGCCCGGGCTTCTTCGAGC
TCGATGGGCGGAAAGCGGGAGGAGGAGGATTTTGAGGAAGAAGAGGTGCC
GACGGAGCTGAACACGATCAACAGCTCTGGAGGGTTCCTGGTGGTTTCGC
CGGATAAGTTGTCGGTCAAGTACACTAGCGTCAATCTGCACGGCCATGAT
GTCGGCGTCGTCCAAGCTAACAAGCCGGCTCCTGTTAAGCGGCTTGTTTA
TTACTTTGAGATTTACGTGGAGGACGCTGGTGCCAAGGGCCAGATTGCCA
TTGGATTTACCAGTGAGTCTTTCAAGATGCGGAGGCAACCAGGGTGGGAA
GCGAACAGTTGTGGATACCATGGGGATGATGGATTGCTTTATCGTGGACA
AGGAAAGGGAGAGGCCTTTGGCCCTACGTTTACAACTAATGATACTGTTG
GTG
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