DN618118

Overview
NameDN618118
Unique NameDN618118
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618118 vs. ExPASy Swiss-Prot
Match: RGA3_SOLBU (Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.071e-13
Identity = 42/124 (33.87%), Postives = 72/124 (58.06%), Query Frame = 2
Query:  110 VVQPIVEKAIEAAVSLIKEEVGSVLGVKSEVEKLLSKLTSIKAVLEDAEERQLKVPQLKDWLGKLRNAAYDAEDILETFATQVAMHKRKQKLRRVRTPISGNKISYQYDAAQRIKKILDRLDVI 481
            + +  ++  ++     I+ E+G V G + E +KL S  + I+AVLEDA+E+QLK   +K+WL KL  AAY+ +DIL+   T+ A  K     + V        I++ Y   +R+K+++++LD I
Sbjct:    1 MAEAFLQVLLDNLTFFIQGELGLVFGFEKEFKKLSSMFSMIQAVLEDAQEKQLKYKAIKNWLQKLNVAAYEVDDILDDCKTEAARFK-----QAVLGRYHPRTITFCYKVGKRMKEMMEKLDAI 119          
BLAST of DN618118 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.309e-11
Identity = 39/125 (31.20%), Postives = 76/125 (60.80%), Query Frame = 2
Query:  110 VVQPIVEKAIEAAVSLIKEEVGSVLGVKSEVEKLLSKLTSIKAVLEDAEERQLKVPQLKDWLGKLRNAAYDAEDILETFATQVAMHKRKQKLRRVRTPISGNKISYQYDAAQRIKKILDRLDVIT 484
            + +  ++  +E   S I +++  + G + E EKL S  ++I+AVL+DA+E+QLK   +++WL KL +AAY+ +DIL     + A+   + +L      I    I++++   +R+K+I+++LD I+
Sbjct:    1 MAEAFLQVLLENLTSFIGDKLVLIFGFEKECEKLSSVFSTIQAVLQDAQEKQLKDKAIENWLQKLNSAAYEVDDILGECKNE-AIRFEQSRLGFYHPGI----INFRHKIGRRMKEIMEKLDAIS 120          
The following BLAST results are available for this feature:
BLAST of DN618118 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RGA3_SOLBU1.071e-1333.87Putative disease resistance protein RGA3 OS=Solanu... [more]
RGA4_SOLBU1.309e-1131.20Putative disease resistance protein RGA4 OS=Solanu... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02C03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618118 ID=DN618118; Name=DN618118; organism=Citrus sinensis; type=EST; length=484bp
ATTTCTCTCTCAGATTCCTCCACACAAATTGATTAACTTGAGGGTCCGCA
GATTAGAAGATCAGCTAGAAACAGAAGCAGAATTGATGGCCGAACTGGTA
GTGTCGCTTGTGGTGCAGCCTATCGTTGAAAAAGCAATTGAAGCTGCTGT
GTCTTTGATCAAAGAAGAGGTTGGTTCGGTGCTTGGCGTAAAGAGTGAAG
TTGAAAAGTTGTTGAGCAAACTAACAAGTATCAAAGCTGTCCTTGAAGAT
GCAGAGGAGAGACAGCTGAAGGTACCCCAGTTGAAAGATTGGCTTGGCAA
GCTCAGAAATGCAGCTTATGACGCCGAAGACATACTGGAGACTTTTGCAA
CTCAAGTTGCTATGCATAAGAGAAAGCAAAAGCTGCGTAGAGTTCGGACT
CCCATCAGCGGTAATAAAATTTCCTATCAATATGATGCCGCCCAGAGGAT
TAAGAAAATTTTAGATAGACTTGATGTTATTACT
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