DN618112

Overview
NameDN618112
Unique NameDN618112
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length711
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12716 contig Csv1_Contig12716:81..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618112 vs. ExPASy Swiss-Prot
Match: PSC13_MAIZE (Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.367e-31
Identity = 64/152 (42.11%), Postives = 98/152 (64.47%), Query Frame = 1
Query:   52 LIALCVLPALVSAVRPNTKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEED 507
            ++ LCV+ +  +A  PN   + ++GRVYCDTC+AGF T  T YIAGAKV++ECK   + ++  + +G TD+TGTY I + + H++ +C  VL++SP+ DC  V   R+R+ V+LT   GIS   R AN +G+ K  P+  CA +L+    +D
Sbjct:   15 ILCLCVVLSCAAADDPNLPDYVIQGRVYCDTCRAGFVTNVTEYIAGAKVRLECKHFGTGKLERAIDGVTDATGTYTIELKDSHEEDICQVVLVASPRKDCDEVQALRDRAGVLLTRNVGISDSLRPANPLGYFKDVPLPVCAALLKQLDSDD 166          
BLAST of DN618112 vs. ExPASy Swiss-Prot
Match: OLEE1_BETVE (Olee1-like protein OS=Betula verrucosa PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.762e-28
Identity = 62/147 (42.18%), Postives = 92/147 (62.59%), Query Frame = 1
Query:   58 ALCVLPALVSAVRPNTKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPG---RERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLR 489
            ALC L  L  A   +   F VEG+VYCD C+  F T  +TY+ GAKV +EC++R+   ++YS + +TD +GTY+I V  DH++++C+  L  S   DC  V+     ++ +R+ LT  NGIS+  R AN +GFMK +P+  CA+ LR
Sbjct:   11 ALCFLSLLGFAYSESR--FFVEGKVYCDNCRTQFVTKLSTYMKGAKVSLECRNREGGTLIYSSDSETDKSGTYRIPVDGDHEEEICEIALKKSSDPDCSEVSKDPFLKKSARISLTKNNGISTPVRLANPLGFMKKKPLPECAKALR 155          
BLAST of DN618112 vs. ExPASy Swiss-Prot
Match: LAT52_SOLLC (Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.762e-28
Identity = 61/152 (40.13%), Postives = 94/152 (61.84%), Query Frame = 1
Query:   34 MARTLRLI-ALCVLPALVSAVRPNTKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVL 486
            MA+ + L+ ALC+L AL +      + F VEG+VYCDTC+  FET  +  + GA VK++C++  +    +S EG TD  G YK+ V+ DH++ +C+  ++ SP+ DCK    G E++R+  +   GI +  R+AN + FMKAE + GC E L
Sbjct:    1 MAKAIVLLSALCIL-ALANFAHCRPEVFDVEGKVYCDTCRVQFETKLSENLEGATVKLQCRNISTEAETFSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSPREDCKESVSGYEKARIECSDNVGIHNAVRFANPLFFMKAESVQGCKEAL 151          
BLAST of DN618112 vs. ExPASy Swiss-Prot
Match: PHLB_PHLPR (Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.114e-25
Identity = 56/133 (42.11%), Postives = 77/133 (57.89%), Query Frame = 1
Query:  112 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGFMKAEPMSGCAEVLRLYQEED 507
            F V GRVYCD C+AGFET  +  + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS NGI  +  RYAN + F + EP+  C  +L+ Y   D
Sbjct:    6 FVVTGRVYCDPCRAGFETNVSHNVQGATVAVDCRPFNGGESKLKAEATTDGLGWYKIEIDQDHQEEICEVVLAKSPDTTCSEIEEFRDRARVPLTSNNGIKQQGIRYANPIAFFRKEPLKECGGILQAYDLRD 138          
BLAST of DN618112 vs. ExPASy Swiss-Prot
Match: CHE1_CHEAL (Pollen allergen Che a 1 OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.032e-25
Identity = 63/164 (38.41%), Postives = 93/164 (56.71%), Query Frame = 1
Query:   28 KTMARTLRLIALCVLPALVSAVRPNTKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAP---GRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEVLRLYQEEDV 510
            K  A  L + ALCVL +L          F V+G VYCDTC+  F T  +T + GA VK+EC++  +    +  E  TD  G Y I V+ D +D +C+  L+ SP ++C  V+     ++ ++V LTS NG +S+ R AN++GFM+ EP+  C EVL+     DV
Sbjct:    3 KCQAVFLLVGALCVL-SLAGVANAAENHFKVQGMVYCDTCRIQFMTRISTIMEGATVKLECRNITAGTQTFKAEAVTDKVGQYSIPVNGDFEDDICEIELVKSPNSECSEVSHDVYAKQSAKVSLTSNNGEASDIRSANALGFMRKEPLKECPEVLKELDLYDV 165          
BLAST of DN618112 vs. ExPASy Swiss-Prot
Match: LOLB_LOLPR (Major pollen allergen Lol p 11 OS=Lolium perenne PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.052e-24
Identity = 54/129 (41.86%), Postives = 75/129 (58.14%), Query Frame = 1
Query:  112 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGFMKAEPMSGCAEVLRLY 495
            F V GRVYCD C+AGFET  +  + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS  GI  +  RYAN + F + EP+  C  +L+ Y
Sbjct:    6 FVVTGRVYCDPCRAGFETNVSHNVEGATVAVDCRPFDGGESKLKAEATTDKDGWYKIEIDQDHQEEICEVVLAKSPDKSCSEIEEFRDRARVPLTSNXGIKQQGIRYANPIAFFRKEPLKECGGILQAY 134          
BLAST of DN618112 vs. ExPASy Swiss-Prot
Match: ALL1_OLEEU (Major pollen allergen OS=Olea europaea PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 46/130 (35.38%), Postives = 76/130 (58.46%), Query Frame = 1
Query:   94 RPNTKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEV 483
            +P    F ++G+VYCDTC+AGF T  + +I GA ++++CKD+++  V ++  G T + G Y +LV  DH+++ C+  LISS + DC  +         +    N ++  TR  N +GF K E +  CA+V
Sbjct:    5 QPPVSQFHIQGQVYCDTCRAGFITELSEFIPGASLRLQCKDKENGDVTFTEVGYTRAEGLYSMLVERDHKNEFCEITLISSGRKDCNEIPTEGWAKPSLKFKLNTVNGTTRTVNPLGFFKKEALPKCAQV 134          
BLAST of DN618112 vs. ExPASy Swiss-Prot
Match: LIGV1_LIGVU (Major pollen allergen Lig v 1 OS=Ligustrum vulgare PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.327e-19
Identity = 44/130 (33.85%), Postives = 75/130 (57.69%), Query Frame = 1
Query:   94 RPNTKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPMSGCAEV 483
            +P    F ++G+VYCDTC+A F T  + +I GA V+++CKD ++ +V ++  G T + G Y +L+  DH+++ C+  LISS + DC  +         +    N ++  TR  N +GF+K E +  C +V
Sbjct:    5 QPPVSQFYIQGQVYCDTCRARFITELSEFIPGAGVRLQCKDGENGKVTFTEVGYTKAEGLYNMLIERDHKNEFCEITLISSSRKDCDEIPTEGWVKPSLKFVLNTVNGTTRTINPLGFLKKEVLPKCPQV 134          
BLAST of DN618112 vs. ExPASy Swiss-Prot
Match: PLAL1_PLALA (Major pollen allergen Pla l 1 OS=Plantago lanceolata PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 43/126 (34.13%), Postives = 68/126 (53.97%), Query Frame = 1
Query:  112 FSVEGRVYCDTCQA-GFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTV---APGR-ERSRVILTSYNGISSETRYANSMGFMKAEPMSGC 474
            F VEG VYC+ C +       +  +AGA+V+++CKD  S +V+YS  G+TD  G Y++ V   H+D  C+  L+ S + DC  +   A G  + S+V L+    I+ +TR+   + F       GC
Sbjct:    9 FHVEGEVYCNVCHSRNLINELSERMAGAQVQLDCKD-DSKKVIYSIGGETDQDGVYRLPVVGYHED--CEIKLVKSSRPDCSEIPKLAKGTIQTSKVDLSKNTTITEKTRHVKPLSFRAKTDAPGC 131          
The following BLAST results are available for this feature:
BLAST of DN618112 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSC13_MAIZE3.367e-3142.11Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE... [more]
OLEE1_BETVE7.762e-2842.18Olee1-like protein OS=Betula verrucosa PE=2 SV=1[more]
LAT52_SOLLC7.762e-2840.13Anther-specific protein LAT52 OS=Solanum lycopersi... [more]
PHLB_PHLPR2.114e-2542.11Pollen allergen Phl p 11 OS=Phleum pratense PE=1 S... [more]
CHE1_CHEAL8.032e-2538.41Pollen allergen Che a 1 OS=Chenopodium album PE=1 ... [more]
LOLB_LOLPR3.052e-2441.86Major pollen allergen Lol p 11 OS=Lolium perenne P... [more]
ALL1_OLEEU6.364e-2235.38Major pollen allergen OS=Olea europaea PE=1 SV=2[more]
LIGV1_LIGVU1.327e-1933.85Major pollen allergen Lig v 1 OS=Ligustrum vulgare... [more]
PLAL1_PLALA1.737e-1134.13Major pollen allergen Pla l 1 OS=Plantago lanceola... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02B24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002B24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618112 ID=DN618112; Name=DN618112; organism=Citrus sinensis; type=EST; length=711bp
TCTTGTTCAGCTTCCTTCATCTCCCATAAGACAATGGCTAGAACATTGAG
GTTGATCGCTCTCTGCGTGCTGCCGGCTCTGGTGAGCGCGGTCCGGCCCA
ACACTAAACCGTTCTCGGTTGAAGGACGCGTGTACTGCGACACCTGCCAA
GCCGGCTTTGAGACCCCCGCTACCACCTACATCGCCGGTGCCAAGGTTAA
GGTTGAATGCAAAGACAGGAAGTCAATGCAAGTAGTATATAGCAGGGAAG
GGAAAACAGACTCAACTGGAACATATAAGATCCTCGTTTCAGAAGACCAT
CAGGATCAACTTTGCGATGCTGTCCTCATTAGTAGCCCCCAGAATGACTG
CAAAACAGTTGCCCCAGGGCGTGAGCGTTCCCGTGTGATCTTGACCAGTT
ACAACGGCATTTCTTCTGAAACCCGATATGCCAATTCAATGGGCTTCATG
AAGGCAGAGCCCATGTCTGGCTGTGCTGAGGTTCTCAGGCTATATCAGGA
GGAGGATGTGTAGAGAATGGTGTGGCATGGTTTTTTCTATCGCTTTCCAT
TTGTTTAAGCTTTGTGTTGCCTTATACTGTCTCTTCTATTAGTAGTGCCC
GGATGGCTGTGTTGTTTCTATGTTTAGAGAATTCTTAATTTGTTGTTAAA
GGACGCGTACGCTATTAATTTATTTATATGCTGGTGCTTCTAGCTTTGAG
ATGTGTTTTAA
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