DN618103

Overview
NameDN618103
Unique NameDN618103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length514
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6075 contig Csv1_Contig6075:598..1111. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618103 vs. ExPASy Swiss-Prot
Match: PSB4_ARATH (Proteasome subunit beta type-4 OS=Arabidopsis thaliana GN=PBG1 PE=1 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 3.312e-43
Identity = 79/94 (84.04%), Postives = 88/94 (93.62%), Query Frame = -3
Query:  231 VNFEDSHVATGFGNHLARPILRDEWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFWGFTAFQNPTAGAEGSW 512
            V+FED HVATGFGNHLARPILRDEWH +LS+EDGVKLLEKCMRVLLYRDRSA+NKLQIAKITEEG T+SQPY+LKT+W F++F NPTAGA GSW
Sbjct:  153 VSFEDDHVATGFGNHLARPILRDEWHADLSFEDGVKLLEKCMRVLLYRDRSAINKLQIAKITEEGVTVSQPYSLKTYWEFSSFHNPTAGAAGSW 246          
BLAST of DN618103 vs. ExPASy Swiss-Prot
Match: PSB4_MOUSE (Proteasome subunit beta type-4 OS=Mus musculus GN=Psmb4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.960e-11
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = -3
Query:  279 VNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 512
            V +E   +ATG+G +LA+P+LR+  E    LS  +  +L+E+CMRVL YRD  + N+ QIA +TE+G  I  P + +T W
Sbjct:  175 VAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDARSYNRFQIATVTEKGVEIEGPLSAQTNW 254          
BLAST of DN618103 vs. ExPASy Swiss-Prot
Match: PSB4_BOVIN (Proteasome subunit beta type-4 OS=Bos taurus GN=PSMB4 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.960e-11
Identity = 35/80 (43.75%), Postives = 52/80 (65.00%), Query Frame = -3
Query:  279 VNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 512
            V +E   +ATG+G +LA+P+LR+  E    LS  +  +L+E+CMRVL YRD  + N+ QIA +TE+G  I  P + +T W
Sbjct:  175 VAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDARSYNRFQIATVTEKGVEIEGPLSAETNW 254          
BLAST of DN618103 vs. ExPASy Swiss-Prot
Match: PSB4_RAT (Proteasome subunit beta type-4 OS=Rattus norvegicus GN=Psmb4 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.559e-11
Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = -3
Query:  279 VNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 512
            V +E   +ATG+G +LA+P+LR+  E    LS  +  +L+E+CMRVL YRD  + N+ Q+A +TE+G  I  P + +T W
Sbjct:  174 VAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARELVERCMRVLYYRDARSYNRFQVATVTEKGVEIEGPLSAQTNW 253          
BLAST of DN618103 vs. ExPASy Swiss-Prot
Match: PSB4_HUMAN (Proteasome subunit beta type-4 OS=Homo sapiens GN=PSMB4 PE=1 SV=4)

HSP 1 Score: 67.781 bits (164), Expect = 3.343e-11
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = -3
Query:  279 VNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 512
            V +E   +ATG+G +LA+P+LR+  E    LS  +   L+E+CMRVL YRD  + N+ QIA +TE+G  I  P + +T W
Sbjct:  175 VAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRDARSYNRFQIATVTEKGVEIEGPLSTETNW 254          
BLAST of DN618103 vs. ExPASy Swiss-Prot
Match: PSB4_XENLA (Proteasome subunit beta type-4 (Fragment) OS=Xenopus laevis GN=psmb4 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.725e-11
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = -3
Query:  279 VNFEDSHVATGFGNHLARPILRD--EWHENLSYEDGVKLLEKCMRVLLYRDRSAVNKLQIAKITEEGTTISQPYALKTFW 512
            V +E   +ATGFG +LA+P+LR+  E    LS E+  +L+++CM+VL YRD  + N+ +I  +TE G  +  P + +T W
Sbjct:  153 VAYEAPTIATGFGAYLAQPLLREVTENKATLSKEEARQLVDRCMKVLYYRDARSYNRFEITTVTESGVEVEGPLSSETNW 232          
The following BLAST results are available for this feature:
BLAST of DN618103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSB4_ARATH3.312e-4384.04Proteasome subunit beta type-4 OS=Arabidopsis thal... [more]
PSB4_MOUSE1.960e-1143.75Proteasome subunit beta type-4 OS=Mus musculus GN=... [more]
PSB4_BOVIN1.960e-1143.75Proteasome subunit beta type-4 OS=Bos taurus GN=PS... [more]
PSB4_RAT2.559e-1142.50Proteasome subunit beta type-4 OS=Rattus norvegicu... [more]
PSB4_HUMAN3.343e-1143.75Proteasome subunit beta type-4 OS=Homo sapiens GN=... [more]
PSB4_XENLA9.725e-1140.00Proteasome subunit beta type-4 (Fragment) OS=Xenop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02B20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002B20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618103 ID=DN618103; Name=DN618103; organism=Citrus sinensis; type=EST; length=514bp
TAACATAAAAGTTGCTCTCACAAGCCAACATCTCACCATCAGAACCTATG
GATCAAGTGGCACCTTACAAGTCATCGGCTTTAAAACAAAGATAAAGATG
CATGATTCTGATAACCATTATGTGTCCTTAAATTCCACAAGTAACACGGG
GAAAAAGACATGAAAGAAGCTACAAACTCCATAAGTAACACAGGGAAAGA
GACATGAAAGAAGCTATCTCATGCCAATTACCATGATCCCTCAGCACCTG
CTGTTGGATTCTGGAATGCAGTGAATCCCCAGAACGTCTTCAATGCGTAG
GGCTGGGAAATTGTTGTCCCTTCTTCAGTGATCTTTGCTATCTGCAGCTT
GTTGACAGCAGATCTATCACGATACAGGAGCACACGCATGCACTTTTCCA
GCAACTTAACGCCATCTTCATAACTCAAGTTTTCATGCCATTCATCACGA
AGAATTGGCCTTGCAAGATGATTCCCAAACCCAGTTGCAACATGGCTGTC
CTCAAAGTTCACTC
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