DN618095

Overview
NameDN618095
Unique NameDN618095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2103 contig Csv1_Contig2103:512..1139. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618095 vs. ExPASy Swiss-Prot
Match: RL73_ARATH (60S ribosomal protein L7-3 OS=Arabidopsis thaliana GN=RPL7C PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.080e-44
Identity = 84/105 (80.00%), Postives = 92/105 (87.62%), Query Frame = -3
Query:  312 YPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 626
            YPNLKSV+ELIYKRGYGKL+ QRIALTDNSI+++ALGK GIIC+EDLIHEIMTVGPHFKEANNFLWPF           KRNHYVEGGDAGNREN+INEL+RRMN
Sbjct:  138 YPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELVRRMN 242          
BLAST of DN618095 vs. ExPASy Swiss-Prot
Match: RL72_ARATH (60S ribosomal protein L7-2 OS=Arabidopsis thaliana GN=RPL7B PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.311e-43
Identity = 84/105 (80.00%), Postives = 91/105 (86.67%), Query Frame = -3
Query:  312 YPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 626
            +PNLKSV+ELIYKRGYGKL+ QRIALTDNSI+E+ALGK GIIC EDLIHEI+TVGPHFKEANNFLWPF           KRNHYVEGGDAGNREN+INELIRRMN
Sbjct:  138 FPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN 242          
BLAST of DN618095 vs. ExPASy Swiss-Prot
Match: RL74_ARATH (60S ribosomal protein L7-4 OS=Arabidopsis thaliana GN=RPL7D PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.956e-42
Identity = 81/105 (77.14%), Postives = 90/105 (85.71%), Query Frame = -3
Query:  312 YPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 626
            YPNLKSV+ELIYKRG+GKL+ QR ALTDNSI+++ LGK GIIC+EDLIHEIMTVGPHFKEANNFLWPF           KRNHYVEGGDAGNREN+INEL+RRMN
Sbjct:  140 YPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEANNFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFINELVRRMN 244          
BLAST of DN618095 vs. ExPASy Swiss-Prot
Match: RL7_MOUSE (60S ribosomal protein L7 OS=Mus musculus GN=Rpl7 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.238e-38
Identity = 77/105 (73.33%), Postives = 85/105 (80.95%), Query Frame = -3
Query:  312 YPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 626
            YPNLKSV ELIYKRGYGK++K+RIALTDNS+I ++LGKFGIICMEDLIHEI TVG  FKEANNFLWPF           K  H+VEGGDAGNRE+ IN LIRRMN
Sbjct:  166 YPNLKSVNELIYKRGYGKINKKRIALTDNSLIARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 270          
BLAST of DN618095 vs. ExPASy Swiss-Prot
Match: RL7_RAT (60S ribosomal protein L7 OS=Rattus norvegicus GN=Rpl7 PE=1 SV=2)

HSP 1 Score: 158.303 bits (399), Expect = 2.923e-38
Identity = 76/105 (72.38%), Postives = 85/105 (80.95%), Query Frame = -3
Query:  312 YPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 626
            YPNLKSV ELIYKRGYGK++K+RIALTDNS++ ++LGKFGIICMEDLIHEI TVG  FKEANNFLWPF           K  H+VEGGDAGNRE+ IN LIRRMN
Sbjct:  156 YPNLKSVNELIYKRGYGKINKKRIALTDNSLVARSLGKFGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 260          
BLAST of DN618095 vs. ExPASy Swiss-Prot
Match: RL7_PONAB (60S ribosomal protein L7 OS=Pongo abelii GN=RPL7 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.111e-37
Identity = 75/105 (71.43%), Postives = 85/105 (80.95%), Query Frame = -3
Query:  312 YPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 626
            YPNLKSV ELIYKRGYGK++K+RIALTDN++I ++LGK+GIICMEDLIHEI TVG  FKEANNFLWPF           K  H+VEGGDAGNRE+ IN LIRRMN
Sbjct:  143 YPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 247          
BLAST of DN618095 vs. ExPASy Swiss-Prot
Match: RL7_MACFA (60S ribosomal protein L7 OS=Macaca fascicularis GN=RPL7 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.111e-37
Identity = 75/105 (71.43%), Postives = 85/105 (80.95%), Query Frame = -3
Query:  312 YPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 626
            YPNLKSV ELIYKRGYGK++K+RIALTDN++I ++LGK+GIICMEDLIHEI TVG  FKEANNFLWPF           K  H+VEGGDAGNRE+ IN LIRRMN
Sbjct:  143 YPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEICTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 247          
BLAST of DN618095 vs. ExPASy Swiss-Prot
Match: RL7_HUMAN (60S ribosomal protein L7 OS=Homo sapiens GN=RPL7 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.111e-37
Identity = 75/105 (71.43%), Postives = 85/105 (80.95%), Query Frame = -3
Query:  312 YPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 626
            YPNLKSV ELIYKRGYGK++K+RIALTDN++I ++LGK+GIICMEDLIHEI TVG  FKEANNFLWPF           K  H+VEGGDAGNRE+ IN LIRRMN
Sbjct:  144 YPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248          
BLAST of DN618095 vs. ExPASy Swiss-Prot
Match: RL7_BOVIN (60S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.111e-37
Identity = 75/105 (71.43%), Postives = 85/105 (80.95%), Query Frame = -3
Query:  312 YPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKRNHYVEGGDAGNRENYINELIRRMN 626
            YPNLKSV ELIYKRGYGK++K+RIALTDN++I ++LGK+GIICMEDLIHEI TVG  FKEANNFLWPF           K  H+VEGGDAGNRE+ IN LIRRMN
Sbjct:  144 YPNLKSVNELIYKRGYGKINKKRIALTDNALIARSLGKYGIICMEDLIHEIYTVGKRFKEANNFLWPFKLSSPRGGMKKKTTHFVEGGDAGNREDQINRLIRRMN 248          
BLAST of DN618095 vs. ExPASy Swiss-Prot
Match: RL7_NEUCR (60S ribosomal protein L7 OS=Neurospora crassa GN=rpl-7 PE=3 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 5.512e-37
Identity = 73/106 (68.87%), Postives = 88/106 (83.02%), Query Frame = -3
Query:  312 YPNLKSVRELIYKRGYGKLDKQRIALTDNSIIEKALGKFGIICMEDLIHEIMTVGPHFKEANNFLWPFXXXXXXXXXXXKR-NHYVEGGDAGNRENYINELIRRMN 626
            YPNLKSV+ELIYKRGYGK++KQR+ALTDNSIIE+ LGK+GIICMEDLIHEI TVGP+FK+A+NFLWPF           ++  H++EGGD GNRE +IN LIR+MN
Sbjct:  143 YPNLKSVKELIYKRGYGKVNKQRVALTDNSIIEENLGKYGIICMEDLIHEIYTVGPNFKQASNFLWPFKLSNPTGGFRTRKFKHFIEGGDLGNREEHINALIRQMN 248          
The following BLAST results are available for this feature:
BLAST of DN618095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RL73_ARATH6.080e-4480.0060S ribosomal protein L7-3 OS=Arabidopsis thaliana... [more]
RL72_ARATH2.311e-4380.0060S ribosomal protein L7-2 OS=Arabidopsis thaliana... [more]
RL74_ARATH1.956e-4277.1460S ribosomal protein L7-4 OS=Arabidopsis thaliana... [more]
RL7_MOUSE2.238e-3873.3360S ribosomal protein L7 OS=Mus musculus GN=Rpl7 P... [more]
RL7_RAT2.923e-3872.3860S ribosomal protein L7 OS=Rattus norvegicus GN=R... [more]
RL7_PONAB1.111e-3771.4360S ribosomal protein L7 OS=Pongo abelii GN=RPL7 P... [more]
RL7_MACFA1.111e-3771.4360S ribosomal protein L7 OS=Macaca fascicularis GN... [more]
RL7_HUMAN1.111e-3771.4360S ribosomal protein L7 OS=Homo sapiens GN=RPL7 P... [more]
RL7_BOVIN1.111e-3771.4360S ribosomal protein L7 OS=Bos taurus GN=RPL7 PE=... [more]
RL7_NEUCR5.512e-3768.8760S ribosomal protein L7 OS=Neurospora crassa GN=r... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02B16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002B16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618095 ID=DN618095; Name=DN618095; organism=Citrus sinensis; type=EST; length=628bp
CCCCCTTTTTTTTTTTTTTGCGTTACAAAATAGCACAATATTATATGCAA
TCATGAGGCCTTCATGCTTTTGAAAATCTGGACATACATAAAAAATTATG
AACTAACCCTCGAATCCGAAGCAGAATAAAATTTCCAAATAACATCTCAT
GATCCATTGTTTAAAACAAAAACTGTTTCCACATTCAAAGGGGGAACTAA
AATTTTGATTGCTTCGGTACCAACAATATCTTAGCATAAGAACCTCAAAA
CTCTTAAATAATGAAACACCTCAAAACTCTAAATAATCATCAAAATAATG
CGAACTGCCTAGTTCATTCTTCTGATCAGCTCATTGATGTAGTTCTCACG
GTTTCCAGCATCACCACCCTCGACATAGTGGTTCCTCTTCTTCTTCAGGC
CACCCAATGGTGCCTTAAGCTTAAATGGCCATAAAAAGTTGTTAGCCTCC
TTAAAATGAGGTCCCACTGTCATAATCTCATGGATCAGGTCTTCCATGCA
GATGATACCGAACTTGCCCAAAGCCTTCTCAATAATCGAGTTATCAGTCA
AAGCAATTCTCTGCTTATCTAGCTTTCCATATCCCCTCTTGTAAATGAGC
TCCCTAACACTCTTCAAATTGGGGTATC
back to top