DN618090

Overview
NameDN618090
Unique NameDN618090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length422
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4784 contig Csv1_Contig4784:444..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618090 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.094e-36
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = -1
Query:  210 INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 422
            INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG
Sbjct:   78 INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148          
BLAST of DN618090 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.936e-35
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = -1
Query:  210 INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 422
            +NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE+TARSWTQKYAMG
Sbjct:   78 VNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148          
BLAST of DN618090 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 3.302e-35
Identity = 69/71 (97.18%), Postives = 71/71 (100.00%), Query Frame = -1
Query:  210 INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 422
            INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDR+KYE+TARSWTQKYAMG
Sbjct:   78 INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148          
BLAST of DN618090 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 4.313e-35
Identity = 69/71 (97.18%), Postives = 70/71 (98.59%), Query Frame = -1
Query:  210 INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 422
            INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE TAR+WTQKYAMG
Sbjct:   78 INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148          
BLAST of DN618090 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.639e-34
Identity = 68/71 (95.77%), Postives = 70/71 (98.59%), Query Frame = -1
Query:  210 INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 422
            INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD+ KYE+TARSWTQKYAMG
Sbjct:   78 INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148          
BLAST of DN618090 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 3.651e-34
Identity = 67/71 (94.37%), Postives = 70/71 (98.59%), Query Frame = -1
Query:  210 INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 422
            INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTD+ KYE+TAR+WTQKYAMG
Sbjct:   78 INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148          
BLAST of DN618090 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 4.768e-34
Identity = 66/71 (92.96%), Postives = 70/71 (98.59%), Query Frame = -1
Query:  210 INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 422
            INSNGSICLDILKEQWSPALT+SKVLLSICSLLTDPNPDDPLVPEIAH+YKTDR KYE+TA+SWTQKYAMG
Sbjct:   78 INSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDPLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148          
BLAST of DN618090 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 9.943e-32
Identity = 62/70 (88.57%), Postives = 67/70 (95.71%), Query Frame = -1
Query:  213 INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 422
            INSNG+ICLDILK+QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH+YKTD+ KYE  ARSWTQKYA+
Sbjct:   78 INSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHIYKTDKTKYEAMARSWTQKYAL 147          
BLAST of DN618090 vs. ExPASy Swiss-Prot
Match: UBC1_COLGL (Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletotrichum gloeosporioides GN=UBC1 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.778e-31
Identity = 60/70 (85.71%), Postives = 68/70 (97.14%), Query Frame = -1
Query:  213 INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 422
            INSNGSICLDIL++QWSPALTISKVLLSICS+LTDPNPD+PLVPEIAH+YKTDRA+YE TAR WT+KYA+
Sbjct:   78 INSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDEPLVPEIAHVYKTDRARYEATAREWTRKYAI 147          
BLAST of DN618090 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 6.445e-31
Identity = 60/70 (85.71%), Postives = 68/70 (97.14%), Query Frame = -1
Query:  213 INSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 422
            INSNGSICLDIL++QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH+YKTDR++YE +AR WT+KYA+
Sbjct:   78 INSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAI 147          
The following BLAST results are available for this feature:
BLAST of DN618090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
UBC4_SOLLC5.094e-36100.00Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ... [more]
UBC28_ARATH1.936e-3597.18Ubiquitin carrier protein E2 28 OS=Arabidopsis tha... [more]
UBC11_ARATH3.302e-3597.18Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ... [more]
UBC8_ARATH4.313e-3597.18Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t... [more]
UBC10_ARATH1.639e-3495.77Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ... [more]
UBC9_ARATH3.651e-3494.37SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia... [more]
UBC30_ARATH4.768e-3492.96Ubiquitin carrier protein E2 30 OS=Arabidopsis tha... [more]
UBC29_ARATH9.943e-3288.57Ubiquitin carrier protein E2 29 OS=Arabidopsis tha... [more]
UBC1_COLGL3.778e-3185.71Ubiquitin-conjugating enzyme E2-16 kDa OS=Colletot... [more]
UBC4_SCHPO6.445e-3185.71Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02B13_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002B13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618090 ID=DN618090; Name=DN618090; organism=Citrus sinensis; type=EST; length=422bp
AAAGGCAGCTCAATTCTGCAGTAAATTATAATTTAAGTATTGAAGAACAA
TGCTAAATTTGAAAGTAACCCCACATAAAACCTTTTAACAACTTAGTAAA
CAAAACCAAATATCGTCTTTTAATATCTGAAACAAACTTATTTCTATTAT
TTACTAATAGGACCACAAGCCATTAATGTTCTCAGGGGCATACAGCCTAG
CCCCTCTTAACCCATGGCATACTTCTGAGTCCAGGATCGAGCAGTAGTCT
CATATTTGGCTCTGTCAGTCTTGTACATGTGAGCAATCTCAGGCACAAGT
GGGTCATCTGGGTTCGGATCAGTAAGTAGTGAGCAAATTGACAGAAGTAC
CTTGGATATTGTCAAAGCAGGGCTCCACTGCTCCTTGAGAATGTCAAGAC
AGATGCTACCATTGCTGTTGAT
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