DN618088

Overview
NameDN618088
Unique NameDN618088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length473
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5768 contig Csv1_Contig5768:1..474. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618088 vs. ExPASy Swiss-Prot
Match: GLGL1_BETVU (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Beta vulgaris GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 3.708e-32
Identity = 66/75 (88.00%), Postives = 72/75 (96.00%), Query Frame = -2
Query:  248 EIASLLAEGKVPIGVGQNTKIKNCIIDKNAKIGKNVIIANAEGVQEADRPNEGFYIRSGITVILKNATINDGTVI 472
            EIASLLAEGKVP+GVGQNTKIKNCIIDKNAKIGK+V+IAN +GV+EADRPNEGFYIRSGIT+ILKNATI DG VI
Sbjct:  448 EIASLLAEGKVPVGVGQNTKIKNCIIDKNAKIGKDVVIANTDGVEEADRPNEGFYIRSGITIILKNATIQDGLVI 522          
BLAST of DN618088 vs. ExPASy Swiss-Prot
Match: GLGL2_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic OS=Arabidopsis thaliana GN=APL2 PE=2 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 1.193e-30
Identity = 63/72 (87.50%), Postives = 69/72 (95.83%), Query Frame = -2
Query:  257 EIASLLAEGKVPIGVGQNTKIKNCIIDKNAKIGKNVIIANAEGVQEADRPNEGFYIRSGITVILKNATINDG 472
            EIASLLAEGKVP+GVGQNTKIKNCIIDKNAKIGKNV+IANA+GV+E DRP EGF+IRSGITV+LKNATI DG
Sbjct:  444 EIASLLAEGKVPVGVGQNTKIKNCIIDKNAKIGKNVVIANADGVEEGDRPEEGFHIRSGITVVLKNATIRDG 515          
BLAST of DN618088 vs. ExPASy Swiss-Prot
Match: GLGL2_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 2, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS2 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.722e-29
Identity = 64/75 (85.33%), Postives = 69/75 (92.00%), Query Frame = -2
Query:  248 EIASLLAEGKVPIGVGQNTKIKNCIIDKNAKIGKNVIIANAEGVQEADRPNEGFYIRSGITVILKNATINDGTVI 472
            EIASLLAEGKVPIGVG NTKI+NCIIDKNAKIGK+V+I N EGV+EADR  EGFYIRSGITVI+KNATI DGTVI
Sbjct:  445 EIASLLAEGKVPIGVGPNTKIQNCIIDKNAKIGKDVVILNKEGVEEADRSAEGFYIRSGITVIMKNATIKDGTVI 519          
BLAST of DN618088 vs. ExPASy Swiss-Prot
Match: GLGL1_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 1 (Fragment) OS=Solanum tuberosum GN=AGPS1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.458e-28
Identity = 61/75 (81.33%), Postives = 67/75 (89.33%), Query Frame = -2
Query:  248 EIASLLAEGKVPIGVGQNTKIKNCIIDKNAKIGKNVIIANAEGVQEADRPNEGFYIRSGITVILKNATINDGTVI 472
            EIASLLAEGKVPIG+G+NTKI+ CIIDKNAKIGKNV I N +GVQEADRP EGFYIRSGI +IL+ ATI DGTVI
Sbjct:  396 EIASLLAEGKVPIGIGENTKIRKCIIDKNAKIGKNVSIINKDGVQEADRPEEGFYIRSGIIIILEKATIRDGTVI 470          
BLAST of DN618088 vs. ExPASy Swiss-Prot
Match: GLGL1_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ADG2 PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 5.540e-28
Identity = 57/75 (76.00%), Postives = 69/75 (92.00%), Query Frame = -2
Query:  248 EIASLLAEGKVPIGVGQNTKIKNCIIDKNAKIGKNVIIANAEGVQEADRPNEGFYIRSGITVILKNATINDGTVI 472
            E+A+LLAEG VPIG+G+NTKI+ CIIDKNA++GKNVIIAN+EG+QEADR ++GFYIRSGITVILKN+ I DG VI
Sbjct:  448 EVAALLAEGNVPIGIGENTKIQECIIDKNARVGKNVIIANSEGIQEADRSSDGFYIRSGITVILKNSVIKDGVVI 522          
BLAST of DN618088 vs. ExPASy Swiss-Prot
Match: GLGL4_ARATH (Probable glucose-1-phosphate adenylyltransferase large subunit, chloroplastic OS=Arabidopsis thaliana GN=At2g21590 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 9.450e-28
Identity = 61/75 (81.33%), Postives = 67/75 (89.33%), Query Frame = -2
Query:  248 EIASLLAEGKVPIGVGQNTKIKNCIIDKNAKIGKNVIIANAEGVQEADRPNEGFYIRSGITVILKNATINDGTVI 472
            EIASLLAEGKVPIG+G++TKI+ CIIDKNAKIGKNVII N   VQEADRP EGFYIRSGITVI++ ATI DGTVI
Sbjct:  449 EIASLLAEGKVPIGIGKDTKIRKCIIDKNAKIGKNVIIMNKGDVQEADRPEEGFYIRSGITVIVEKATIQDGTVI 523          
BLAST of DN618088 vs. ExPASy Swiss-Prot
Match: GLGL3_SOLTU (Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic/amyloplastic OS=Solanum tuberosum GN=AGPS3 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.105e-27
Identity = 58/75 (77.33%), Postives = 69/75 (92.00%), Query Frame = -2
Query:  248 EIASLLAEGKVPIGVGQNTKIKNCIIDKNAKIGKNVIIANAEGVQEADRPNEGFYIRSGITVILKNATINDGTVI 472
            EI S LAEGKVP+G+G+NT+IK+CIIDKNA+IGKNV+IAN+EGVQEADR +EGFY+ SGITVI KN+TI DGTVI
Sbjct:  409 EIRSQLAEGKVPLGIGENTRIKDCIIDKNARIGKNVVIANSEGVQEADRSSEGFYMASGITVISKNSTIPDGTVI 483          
BLAST of DN618088 vs. ExPASy Swiss-Prot
Match: GLGL2_WHEAT (Glucose-1-phosphate adenylyltransferase large subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-L PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 4.690e-27
Identity = 56/75 (74.67%), Postives = 67/75 (89.33%), Query Frame = -2
Query:  248 EIASLLAEGKVPIGVGQNTKIKNCIIDKNAKIGKNVIIANAEGVQEADRPNEGFYIRSGITVILKNATINDGTVI 472
            EI+ L++EGKVPIGVG+NTKI NCIID NA+IG++V+I+N EGVQEADRP EG+YIRSGI VI KNATI DGTV+
Sbjct:  448 EISRLMSEGKVPIGVGENTKISNCIIDMNARIGRDVVISNKEGVQEADRPEEGYYIRSGIVVIQKNATIKDGTVV 522          
BLAST of DN618088 vs. ExPASy Swiss-Prot
Match: GLGL1_HORVU (Glucose-1-phosphate adenylyltransferase large subunit 1, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 4.690e-27
Identity = 56/75 (74.67%), Postives = 67/75 (89.33%), Query Frame = -2
Query:  248 EIASLLAEGKVPIGVGQNTKIKNCIIDKNAKIGKNVIIANAEGVQEADRPNEGFYIRSGITVILKNATINDGTVI 472
            EI+ L++EGKVPIGVG+NTKI NCIID NA+IG++V+I+N EGVQEADRP EG+YIRSGI VI KNATI DGTV+
Sbjct:  449 EISRLMSEGKVPIGVGENTKISNCIIDMNARIGRDVVISNKEGVQEADRPEEGYYIRSGIVVIQKNATIKDGTVV 523          
BLAST of DN618088 vs. ExPASy Swiss-Prot
Match: GLGL3_ARATH (Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplastic OS=Arabidopsis thaliana GN=APL3 PE=2 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 6.125e-27
Identity = 57/75 (76.00%), Postives = 67/75 (89.33%), Query Frame = -2
Query:  248 EIASLLAEGKVPIGVGQNTKIKNCIIDKNAKIGKNVIIANAEGVQEADRPNEGFYIRSGITVILKNATINDGTVI 472
            EIASLLAEG VPIG+G++TKI+ CIIDKNAKIGKNV+I N + V+EADRP EGFYIRSGITV+++ ATI DGTVI
Sbjct:  447 EIASLLAEGNVPIGIGRDTKIRKCIIDKNAKIGKNVVIMNKDDVKEADRPEEGFYIRSGITVVVEKATIKDGTVI 521          
The following BLAST results are available for this feature:
BLAST of DN618088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
GLGL1_BETVU3.708e-3288.00Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_ARATH1.193e-3087.50Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_SOLTU1.722e-2985.33Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_SOLTU1.458e-2881.33Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_ARATH5.540e-2876.00Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL4_ARATH9.450e-2881.33Probable glucose-1-phosphate adenylyltransferase l... [more]
GLGL3_SOLTU2.105e-2777.33Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL2_WHEAT4.690e-2774.67Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL1_HORVU4.690e-2774.67Glucose-1-phosphate adenylyltransferase large subu... [more]
GLGL3_ARATH6.125e-2776.00Glucose-1-phosphate adenylyltransferase large subu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02B12_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618088 ID=DN618088; Name=DN618088; organism=Citrus sinensis; type=EST; length=473bp
TTTTTTTTTACCAGATAATAAAAGCACTTGCATTTATTTAAGAACTACAA
ATAACATTCTTGGAAGACCCCTCTTACATCGAAGCAACCTGTTAATTTAC
ACATAAGTGTTAATGCTACGTTATCGCGGCAAACTAGTGAAAGTAATGCT
ACGTTATCGCGGCAAACTAGTGAAAGGCAGCAGCCCAGATTCTCTCAGTT
CTATAAACTACATAGTGTGACCCAGAAGAATTGACTTGGAAGAGTTAAAT
AACAGTTCCATCATTAATTGTTGCATTCTTCAGAATGACTGTGATCCCTG
ACCGAATATAAAATCCTTCATTTGGTCTGTCTGCTTCTTGAACACCTTCA
GCATTTGCAATGATCACATTCTTTCCAATCTTGGCATTCTTGTCAATGAT
GCAATTCTTGATTTTTGTATTCTGTCCAACACCAATTGGAACCTTTCCTT
CCGCAAGTAGAGATGCAATTTCA
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