DN618084

Overview
NameDN618084
Unique NameDN618084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN618084 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 5.555e-39
Identity = 84/139 (60.43%), Postives = 97/139 (69.78%), Query Frame = 1
Query:   67 MAQEISNGNHNSASKPPPTPSPLRFSKFF--QSNMRILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR 477
            + ++I N   +   K PP        KF   +   RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKR
Sbjct:   63 LREKIQNLERSFTQKYPPV-------KFLSEKDRKRILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKR 193          
BLAST of DN618084 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.111e-38
Identity = 77/104 (74.04%), Postives = 85/104 (81.73%), Query Frame = 1
Query:  166 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR 477
            RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKR
Sbjct:   90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKR 192          
BLAST of DN618084 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.111e-38
Identity = 77/104 (74.04%), Postives = 85/104 (81.73%), Query Frame = 1
Query:  166 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR 477
            RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKR
Sbjct:   90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKR 192          
BLAST of DN618084 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.111e-38
Identity = 77/104 (74.04%), Postives = 85/104 (81.73%), Query Frame = 1
Query:  166 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR 477
            RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKR
Sbjct:   90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKR 192          
BLAST of DN618084 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.111e-38
Identity = 77/104 (74.04%), Postives = 85/104 (81.73%), Query Frame = 1
Query:  166 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR 477
            RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKR
Sbjct:   90 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKR 192          
BLAST of DN618084 vs. ExPASy Swiss-Prot
Match: UXS1_DANRE (UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 2.111e-38
Identity = 77/104 (74.04%), Postives = 85/104 (81.73%), Query Frame = 1
Query:  166 RILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR 477
            RIL+TGGAGF+GSHL DKLM  + +EV VVDN+FTG K N+  WIGH  FELI HDV EPL IEVDQIYHLA PASP  Y YNP+KT+KTN IGTLNMLGLAKR
Sbjct:   88 RILITGGAGFVGSHLTDKLMM-DGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKR 190          
BLAST of DN618084 vs. ExPASy Swiss-Prot
Match: GALE_METJA (Putative UDP-glucose 4-epimerase OS=Methanocaldococcus jannaschii GN=MJ0211 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.523e-12
Identity = 44/109 (40.37%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  169 ILVTGGAGFIGSHLVDKLMENEKNEVIVVDNYFTGSKDNLRKWIGHPRFELIRHDVTEPLLIE------VDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKR 477
            ILVTGGAGFIGSH+VDKL+EN   +VI++DN  TG+K+N+     +P+ E +  D+ +  L E      V+ + H A   +      NPV     NV+GT+N+L + ++
Sbjct:    2 ILVTGGAGFIGSHIVDKLIEN-NYDVIILDNLTTGNKNNI-----NPKAEFVNADIRDKDLDEKINFKDVEVVIHQAAQINVRNSVENPVYDGDINVLGTINILEMMRK 104          
The following BLAST results are available for this feature:
BLAST of DN618084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
UXS1_XENTR5.555e-3960.43UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro... [more]
UXS1_RAT2.111e-3874.04UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB2.111e-3874.04UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE2.111e-3874.04UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN2.111e-3874.04UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]
UXS1_DANRE2.111e-3874.04UDP-glucuronic acid decarboxylase 1 OS=Danio rerio... [more]
GALE_METJA1.523e-1240.37Putative UDP-glucose 4-epimerase OS=Methanocaldoco... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02B10_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618084 ID=DN618084; Name=DN618084; organism=Citrus sinensis; type=EST; length=477bp
CAACCTTAAAATCGCCACTTTCAATTATTTTATCAGTTTCCCGGAGTGAT
TTAAGAAGTTTGAGGAATGGCTCAGGAAATTTCAAATGGAAATCACAACT
CTGCTTCTAAACCACCTCCAACTCCGTCCCCTTTGAGATTCTCCAAATTT
TTTCAGTCCAACATGAGGATTCTGGTTACTGGAGGAGCTGGATTTATCGG
CTCTCACCTTGTGGACAAGTTGATGGAAAATGAAAAGAACGAGGTGATTG
TAGTTGATAACTACTTCACTGGCTCAAAGGATAACCTAAGGAAATGGATT
GGTCACCCAAGATTTGAGCTTATTCGTCATGATGTGACTGAGCCATTGTT
GATCGAGGTTGATCAAATTTATCACCTTGCTTGTCCTGCCTCCCCAATCT
TCTACAAATACAACCCTGTAAAGACTATAAAGACAAATGTGATTGGTACA
TTGAACATGCTGGGGCTTGCCAAGCGA
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