DN618083

Overview
NameDN618083
Unique NameDN618083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length533
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN618083_ssr176 microsatellite DN618083_ssr176:176..195. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN618083 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.235e-22
Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = -1 
Query:  192 TVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKPDITKATELLGWEPKIKLRDGLPLMEDDFRLRLAVPRKN 533
            TV   G+QTR+F YVSD+V+GL+ LM    + P+N+GNP E T+LE A+ +K L+    EI  +    DDP++RKPDI KA  +LGWEP + L +GL      FR  L     N
Sbjct:  288 TVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANN 401
[Close]
BLAST of DN618083 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.235e-22
Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = -1 
Query:  192 TVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKPDITKATELLGWEPKIKLRDGLPLMEDDFRLRLAVPRKN 533
            TV   G+QTR+F YVSD+V+GL+ LM    + P+N+GNP E T+LE A+ +K L+    EI  +    DDP++RKPDI KA  +LGWEP + L +GL      FR  L     N
Sbjct:  288 TVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANN 401
[Close]
BLAST of DN618083 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.235e-22
Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = -1 
Query:  192 TVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKPDITKATELLGWEPKIKLRDGLPLMEDDFRLRLAVPRKN 533
            TV   G+QTR+F YVSD+V+GL+ LM    + P+N+GNP E T+LE A+ +K L+    EI  +    DDP++RKPDI KA  +LGWEP + L +GL      FR  L     N
Sbjct:  288 TVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANN 401
[Close]
BLAST of DN618083 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.235e-22
Identity = 52/114 (45.61%), Postives = 70/114 (61.40%), Query Frame = -1 
Query:  192 TVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKPDITKATELLGWEPKIKLRDGLPLMEDDFRLRLAVPRKN 533
            TV   G+QTR+F YVSD+V+GL+ LM    + P+N+GNP E T+LE A+ +K L+    EI  +    DDP++RKPDI KA  +LGWEP + L +GL      FR  L     N
Sbjct:  288 TVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPEEHTILEFAQLIKNLVGSGSEIQFLSEAQDDPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELEYQANN 401
[Close]
BLAST of DN618083 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.328e-21
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = -1 
Query:  210 TVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKPDITKATELLGWEPKIKLRDGLPLMEDDFRLRL 533
            TV   G QTR+F YVSD+V+GL+ LM    + P+N+GNP E ++++ A  +K+L+    EI+ +    DDP++RKPDI KA  LLGWEP + L +GL      FR  L
Sbjct:  289 TVYGSGEQTRAFQYVSDLVNGLVALMNSNVSSPVNLGNPQEHSIVQFARLIKQLVGSGGEISFLSEAQDDPQRRKPDIRKAKLLLGWEPVVPLEEGLNKTIHYFRKEL 396
[Close]
BLAST of DN618083 vs. ExPASy Swiss-Prot
Match: UXS1_DANRE (UDP-glucuronic acid decarboxylase 1 OS=Danio rerio GN=uxs1 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 3.041e-21
Identity = 47/97 (48.45%), Postives = 65/97 (67.01%), Query Frame = -1 
Query:  243 TVQAPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGEFTMLELAENVKELINPNVEITMVENTPDDPRQRKPDITKATELLGWEPKIKLRDGL 533
            TV   G+QTR+F YVSD+V+GL+ LM    + P+N+GNP E T+LE A+ +K L+     I  +    DDP++R+PDI KA  LLGWEP + L +GL
Sbjct:  286 TVYGSGSQTRAFQYVSDLVNGLVSLMNSNISSPVNLGNPEEHTILEFAQLIKSLVASRSHIQFLPEAQDDPQRRRPDIRKAKLLLGWEPVVPLEEGL 382
The following BLAST results are available for this feature:
BLAST of DN618083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
UXS1_RAT1.235e-2245.61UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB1.235e-2245.61UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE1.235e-2245.61UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN1.235e-2245.61UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]
UXS1_XENTR2.328e-2145.37UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro... [more]
UXS1_DANRE3.041e-2148.45UDP-glucuronic acid decarboxylase 1 OS=Danio rerio... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_02B10_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618083 ID=DN618083; Name=DN618083; organism=Citrus sinensis; type=EST; length=533bp
CTTATATATAGAAACAAAATACCATTCAATCTTCCATATATGAATAACCA
TGCATGATTTGCAAAATATGAAACCATTGATACCATAACATAATGGAGCA
AAAATCGAAGAGATCAAGCTCAAATTTGCTGATTTATAAGCCTGTCTGCA
AGATTTTATAGTATATAGATAGTGAAGTTCAGTTCAGTTCAGTTCTTTCT
GGGGACAGCAAGCCTGAGCCTGAAATCGTCCTCCATGAGAGGAAGGCCAT
CACGAAGCTTGATCTTCGGTTCCCATCCAAGCAACTCCGTTGCTTTTGTG
ATGTCAGGCTTCCTTTGGCGAGGATCATCTGGGGTGTTTTCCACCATTGT
GATCTCCACATTAGGATTGATTAGCTCTTTAACATTCTCTGCAAGTTCAA
GCATGGTAAATTCACCTGGGTTCCCAATATTGATTGGACCAGTGTTCTCT
CCTTCCATAAGCCGAATAAGGCCATCAACCATGTCTGAGACATAACAGAA
ACTACGAGTTTGTGTTCCAGGAGCTTGAACAGT
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