DN618073

Overview
NameDN618073
Unique NameDN618073
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length568
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4289 contig Csv1_Contig4289:473..1039. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSJ (Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 4.400e-56
Identity = 106/117 (90.60%), Postives = 113/117 (96.58%), Query Frame = -1 
Query:  194 MPKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 544
            M +SSFKLEHPLERR AE+ RIREKYPDRIPVIVEKAE++D+PDIDKKKYLVPADL+VGQFVYVVRKRIKLSAEKAIF+FVKNTLPPT ALMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: ATG8C_ORYSI (Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 4.400e-56
Identity = 106/117 (90.60%), Postives = 113/117 (96.58%), Query Frame = -1 
Query:  194 MPKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 544
            M +SSFKLEHPLERR AE+ RIREKYPDRIPVIVEKAE++D+PDIDKKKYLVPADL+VGQFVYVVRKRIKLSAEKAIF+FVKNTLPPT ALMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MARSSFKLEHPLERRQAEANRIREKYPDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSJ (Autophagy-related protein 8A OS=Oryza sativa subsp. japonica GN=ATG8A PE=3 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.724e-55
Identity = 106/117 (90.60%), Postives = 112/117 (95.73%), Query Frame = -1 
Query:  194 MPKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 544
            M ++SFKLEHPLERR AESARIREKY DRIPVIVEKA+KTDVP+IDKKKYLVPADL+VGQFVYVVRKRIKLS EKAIFVFVKNTLPPT +LMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: ATG8A_ORYSI (Autophagy-related protein 8A OS=Oryza sativa subsp. indica GN=ATG8A PE=1 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 3.724e-55
Identity = 106/117 (90.60%), Postives = 112/117 (95.73%), Query Frame = -1 
Query:  194 MPKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 544
            M ++SFKLEHPLERR AESARIREKY DRIPVIVEKA+KTDVP+IDKKKYLVPADL+VGQFVYVVRKRIKLS EKAIFVFVKNTLPPT +LMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MARTSFKLEHPLERRQAESARIREKYSDRIPVIVEKADKTDVPEIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFVFVKNTLPPTASLMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: ATG8C_ARATH (Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.084e-54
Identity = 104/117 (88.89%), Postives = 112/117 (95.73%), Query Frame = -1 
Query:  194 MPKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 544
            M  SSFKLEHPLERR  ES+RIREKYPDRIPVIVE+AE++DVP+IDKKKYLVPADL+VGQFVYVVRKRIKLSAEKAIFVFVKNTLPPT A+MSAIY+ENKDEDGFLYMTYSGENTFG
Sbjct:    1 MANSSFKLEHPLERRQIESSRIREKYPDRIPVIVERAERSDVPNIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTAAMMSAIYDENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSJ (Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2)

HSP 1 Score: 209.149 bits (531), Expect = 1.198e-53
Identity = 103/117 (88.03%), Postives = 110/117 (94.02%), Query Frame = -1 
Query:  194 MPKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 544
            M KSSFKL+H LERR AE+ RIREKY DRIPVIVEKAE++D+PDIDKKKYLVPADL+VGQFVYVVRKRIKLS EKAIF+FVKNTLPPT ALMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: ATG8B_ORYSI (Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.198e-53
Identity = 103/117 (88.03%), Postives = 110/117 (94.02%), Query Frame = -1 
Query:  194 MPKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 544
            M KSSFKL+H LERR AE+ RIREKY DRIPVIVEKAE++D+PDIDKKKYLVPADL+VGQFVYVVRKRIKLS EKAIF+FVKNTLPPT ALMSAIYEENKDEDGFLYMTYSGENTFG
Sbjct:    1 MAKSSFKLDHTLERRQAEANRIREKYSDRIPVIVEKAERSDIPDIDKKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNTLPPTAALMSAIYEENKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: ATG8A_ARATH (Autophagy-related protein 8a OS=Arabidopsis thaliana GN=ATG8A PE=1 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 3.486e-53
Identity = 102/117 (87.18%), Postives = 111/117 (94.87%), Query Frame = -1 
Query:  194 MPKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFG 544
            M KSSFK+ +PLE R++ES+RIREKYPDRIPVIVEKA ++DVPDIDKKKYLVPADL+VGQFVYVVRKRIKL AEKAIFVFVKNTLPPT ALMSAIYEE+KDEDGFLYMTYSGENTFG
Sbjct:    1 MAKSSFKISNPLEARMSESSRIREKYPDRIPVIVEKAGQSDVPDIDKKKYLVPADLTVGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFG 117
[Close]
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: ATG8B_ARATH (Autophagy-related protein 8b OS=Arabidopsis thaliana GN=ATG8B PE=2 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 7.766e-53
Identity = 101/120 (84.17%), Postives = 111/120 (92.50%), Query Frame = -1 
Query:  185 MPKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGWSF 544
            M K+SFKL +PLE R+AES RIR KYP+R+PVIVEKA ++DVPDIDKKKYLVPADL++GQFVYVVRKRIKL AEKAIFVFVKNTLPPT ALMSAIYEE+KDEDGFLYMTYSGENTFG SF
Sbjct:    1 MEKNSFKLSNPLEMRMAESTRIRAKYPERVPVIVEKAGQSDVPDIDKKKYLVPADLTIGQFVYVVRKRIKLGAEKAIFVFVKNTLPPTAALMSAIYEEHKDEDGFLYMTYSGENTFGGSF 120
[Close]
BLAST of DN618073 vs. ExPASy Swiss-Prot
Match: ATG8D_ARATH (Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 2.260e-52
Identity = 101/120 (84.17%), Postives = 111/120 (92.50%), Query Frame = -1 
Query:  185 MPKSSFKLEHPLERRLAESARIREKYPDRIPVIVEKAEKTDVPDIDKKKYLVPADLSVGQFVYVVRKRIKLSAEKAIFVFVKNTLPPTGALMSAIYEENKDEDGFLYMTYSGENTFGWSF 544
            M  SSFK EHPLE+R AE+ARIREKYPDRIPVIVE+AEK+DVPDID+KKYLVPADL+VGQFVYVVRKRIKLS EKAIF+FVKN LPPT A+MSAIYEE+KDEDGFLYM+YSGENTFG  F
Sbjct:    1 MAISSFKHEHPLEKRQAEAARIREKYPDRIPVIVERAEKSDVPDIDRKKYLVPADLTVGQFVYVVRKRIKLSPEKAIFIFVKNILPPTAAIMSAIYEEHKDEDGFLYMSYSGENTFGIFF 120
The following BLAST results are available for this feature:
BLAST of DN618073 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
ATG8C_ORYSJ4.400e-5690.60Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8C_ORYSI4.400e-5690.60Autophagy-related protein 8C OS=Oryza sativa subsp... [more]
ATG8A_ORYSJ3.724e-5590.60Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8A_ORYSI3.724e-5590.60Autophagy-related protein 8A OS=Oryza sativa subsp... [more]
ATG8C_ARATH1.084e-5488.89Autophagy-related protein 8c OS=Arabidopsis thalia... [more]
ATG8B_ORYSJ1.198e-5388.03Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8B_ORYSI1.198e-5388.03Autophagy-related protein 8B OS=Oryza sativa subsp... [more]
ATG8A_ARATH3.486e-5387.18Autophagy-related protein 8a OS=Arabidopsis thalia... [more]
ATG8B_ARATH7.766e-5384.17Autophagy-related protein 8b OS=Arabidopsis thalia... [more]
ATG8D_ARATH2.260e-5284.17Autophagy-related protein 8d OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02B05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002B05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618073 ID=DN618073; Name=DN618073; organism=Citrus sinensis; type=EST; length=568bp
GTTAACTTTCCTATCATCAACTGGATGCAATCAACCCAAAATAAAAACAA
TCATCAACTGATGCAATCAACCCCAAATAAAAACAAGATATCAGTGAACA
TGTCTGGGAATGGCTTAAAAGGGATCAACTGAGAATATACAACTTTCAAA
TTTTATGATACATGGCTTGTTGCCTTCGCTCTTAAAATGACCAACCGAAG
GTATTCTCTCCACTGTAAGTCATGTAAAGAAAACCATCTTCATCCTTGTT
TTCCTCATATATAGCAGACATCAAGGCACCGGTTGGAGGTAAAGTATTCT
TAACAAAAACAAATATGGCCTTTTCTGCACTGAGCTTAATCCTTTTACGG
ACAACATAAACAAATTGTCCCACAGATAAATCCGCTGGGACAAGGTATTT
TTTCTTGTCAATGTCAGGAACATCAGTCTTCTCAGCCTTCTCCACAATCA
CCGGAATCCTGTCAGGATACTTCTCTCTAATGCGAGCAGATTCTGCCAGC
CTCCTCTCCAATGGATGCTCGAGCTTGAATGAACTTTTGGGCATGGCGAA
ACTGACGCTACGATGACT
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