DN618071

Overview
NameDN618071
Unique NameDN618071
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length524
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11493 contig Csv1_Contig11493:756..1279. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618071 vs. ExPASy Swiss-Prot
Match: GLNA1_ALNGL (Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 5.817e-46
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = -2
Query:  248 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 523
            +IKKAIEKLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETT+LWKP
Sbjct:  265 IIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTLLWKP 356          
BLAST of DN618071 vs. ExPASy Swiss-Prot
Match: GLNA2_VITVI (Glutamine synthetase cytosolic isozyme 2 OS=Vitis vinifera GN=GS1-2 PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.692e-45
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = -2
Query:  248 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 523
            +IKKAIEKLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAE+TILWKP
Sbjct:  265 IIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAESTILWKP 356          
BLAST of DN618071 vs. ExPASy Swiss-Prot
Match: GLNA2_PHAVU (Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.692e-45
Identity = 86/92 (93.48%), Postives = 90/92 (97.83%), Query Frame = -2
Query:  248 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 523
            VIKKAIEKLG RH EHIAAYG+GNERRLTGRHETADINTFSWGVANRG+S+RVGRDTEK+GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  265 VIKKAIEKLGLRHKEHIAAYGKGNERRLTGRHETADINTFSWGVANRGSSVRVGRDTEKQGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of DN618071 vs. ExPASy Swiss-Prot
Match: GLNA1_VITVI (Glutamine synthetase cytosolic isozyme 1 OS=Vitis vinifera GN=GS1-1 PE=2 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.210e-45
Identity = 88/92 (95.65%), Postives = 88/92 (95.65%), Query Frame = -2
Query:  248 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 523
            VIKKAIEKLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIAETTILWKP
Sbjct:  265 VIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356          
BLAST of DN618071 vs. ExPASy Swiss-Prot
Match: GLNA1_LOTJA (Glutamine synthetase cytosolic isozyme OS=Lotus japonicus GN=GLN1 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 2.210e-45
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = -2
Query:  248 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 523
            VIKKAI+KLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  265 VIKKAIDKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356          
BLAST of DN618071 vs. ExPASy Swiss-Prot
Match: GLNA_VIGAC (Glutamine synthetase nodule isozyme OS=Vigna aconitifolia PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 2.887e-45
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = -2
Query:  248 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 523
            VIK AIEKLGKRH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEK GKGYFEDRRPASNMDPYVVTSMIA+TTILWKP
Sbjct:  265 VIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 356          
BLAST of DN618071 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 6.431e-45
Identity = 85/92 (92.39%), Postives = 89/92 (96.74%), Query Frame = -2
Query:  248 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 523
            VIKKAIEKL  RH EHI+AYGEGNERRLTGRHETAD+NTFSWGVANRGAS+RVGRDTEKEGKGYFEDRRPASNMDPY+VTSMIAETTILWKP
Sbjct:  266 VIKKAIEKLKLRHKEHISAYGEGNERRLTGRHETADMNTFSWGVANRGASVRVGRDTEKEGKGYFEDRRPASNMDPYIVTSMIAETTILWKP 357          
BLAST of DN618071 vs. ExPASy Swiss-Prot
Match: GLNA3_MEDSA (Glutamine synthetase nodule isozyme OS=Medicago sativa GN=GS1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 8.399e-45
Identity = 83/92 (90.22%), Postives = 89/92 (96.74%), Query Frame = -2
Query:  248 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 523
            +IKKAIEKLG RH EHIAAYGEGNERRLTG+HET DINTFSWGVANRGAS+RVGRDTEK+GKGYFEDRRP+SNMDPYVVTSMIAETT+LWKP
Sbjct:  265 IIKKAIEKLGLRHKEHIAAYGEGNERRLTGKHETTDINTFSWGVANRGASVRVGRDTEKDGKGYFEDRRPSSNMDPYVVTSMIAETTLLWKP 356          
BLAST of DN618071 vs. ExPASy Swiss-Prot
Match: GLNA_LACSA (Glutamine synthetase OS=Lactuca sativa PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.097e-44
Identity = 87/90 (96.67%), Postives = 87/90 (96.67%), Query Frame = -2
Query:  254 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 523
            VIKKAIEKLG RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW
Sbjct:  265 VIKKAIEKLGLRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILW 354          
BLAST of DN618071 vs. ExPASy Swiss-Prot
Match: GLNA5_MAIZE (Glutamine synthetase root isozyme 5 OS=Zea mays GN=GS1-5 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.097e-44
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = -2
Query:  251 VIKKAIEKLGKRHGEHIAAYGEGNERRLTGRHETADINTFSWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTSMIAETTILWK 523
            VIK+AIEKLG+RH EHIAAYGEGNERRLTGRHETADINTF WGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVT MIA+TTILWK
Sbjct:  265 VIKEAIEKLGRRHREHIAAYGEGNERRLTGRHETADINTFKWGVANRGASIRVGRDTEKEGKGYFEDRRPASNMDPYVVTGMIADTTILWK 355          
The following BLAST results are available for this feature:
BLAST of DN618071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
GLNA1_ALNGL5.817e-4694.57Glutamine synthetase OS=Alnus glutinosa GN=GLN1 PE... [more]
GLNA2_VITVI1.692e-4594.57Glutamine synthetase cytosolic isozyme 2 OS=Vitis ... [more]
GLNA2_PHAVU1.692e-4593.48Glutamine synthetase PR-2 OS=Phaseolus vulgaris PE... [more]
GLNA1_VITVI2.210e-4595.65Glutamine synthetase cytosolic isozyme 1 OS=Vitis ... [more]
GLNA1_LOTJA2.210e-4594.57Glutamine synthetase cytosolic isozyme OS=Lotus ja... [more]
GLNA_VIGAC2.887e-4594.57Glutamine synthetase nodule isozyme OS=Vigna aconi... [more]
GLNA_PINSY6.431e-4592.39Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLNA3_MEDSA8.399e-4590.22Glutamine synthetase nodule isozyme OS=Medicago sa... [more]
GLNA_LACSA1.097e-4496.67Glutamine synthetase OS=Lactuca sativa PE=2 SV=2[more]
GLNA5_MAIZE1.097e-4493.41Glutamine synthetase root isozyme 5 OS=Zea mays GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02B04_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618071 ID=DN618071; Name=DN618071; organism=Citrus sinensis; type=EST; length=524bp
TTTATTTTTTAAACAGAAGCGAAATAGTTTTAAACTATAATATAGTAATC
ACAACTGAGCATCCCAAAGAATGATGAACAAGAGAAACAGAGTACAGTTT
TGAATGGCAAGGAACAAATTCAAACAACAGACTTAAATGCATAGACAAAT
TATAAAAACATAAGAATTATTTTTGTGGTGGGTTCAATTTAAGCTTTCAT
TTTCCCTCGATTTCTTCTTCGTCATCCATGCTCAAGTTTGTTTTCTAAGG
CTTCCAGAGAATGGTGGTTTCAGCGATCATTGAAGTCACAACATATGGGT
CCATGTTTGAAGCTGGCCTTCTGTCTTCAAAGTATCCCTTTCCTTCTTTC
TCAGTGTCACGACCAACGCGAATGGAGGCACCTCTGTTAGCGACACCCCA
AGAAAAAGTGTTGATATCTGCAGTTTCATGTCGACCTGTCAGTCTTCTTT
CGTTGCCCTCTCCATAAGCAGCAATGTGTTCCCCATGGCGTTTCCCCAAC
TTTTCAATTGCCTTCTTGATCACA
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