DN618063

Overview
NameDN618063
Unique NameDN618063
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11760 contig Csv1_Contig11760:1336..1932. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618063 vs. ExPASy Swiss-Prot
Match: DXS_ARATH (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Arabidopsis thaliana GN=CLA1 PE=1 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 1.863e-39
Identity = 79/113 (69.91%), Postives = 92/113 (81.42%), Query Frame = -1
Query:  253 AANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 591
            AA ML+ + ++VTVADARFCKPLD  LIR LA  HE+LITVEEGS+GGFGSHV  FL L G+LDG LK R MVLPDRYIDHG+PADQL E+GL   HI+AT L+L+G P+EAL
Sbjct:  604 AAVMLEERGLNVTVADARFCKPLDRALIRSLAKSHEVLITVEEGSIGGFGSHVVQFLALDGLLDGKLKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNLIGAPREAL 716          
BLAST of DN618063 vs. ExPASy Swiss-Prot
Match: DXS_ORYSJ (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CLA1 PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.208e-38
Identity = 75/115 (65.22%), Postives = 95/115 (82.61%), Query Frame = -1
Query:  247 AANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALLI 591
            AA++++   + VTVADARFCKPLD  LIR+LA+ HE+L+TVEEGS+GGFGSHV  F+ L G+LDG LK R +VLPDRYIDHGSPADQL E+GL+  HI+ATV ++LG+ +EAL I
Sbjct:  600 AASLVERHGLKVTVADARFCKPLDQTLIRRLASSHEVLLTVEEGSIGGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVLGQAREALAI 714          
BLAST of DN618063 vs. ExPASy Swiss-Prot
Match: DXS_CAPAN (Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplastic OS=Capsicum annuum GN=TKT2 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.060e-38
Identity = 75/113 (66.37%), Postives = 94/113 (83.19%), Query Frame = -1
Query:  253 AANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 591
            AA++L+S+ + VTVADARFCKPLD  LIR LA  HE+L+TVE+GS+GGFGSHV  F+ L G+LDG LK R +VLPDRYIDHGSPADQL E+GL+  HI+ATV ++LG+ +EAL
Sbjct:  603 AASVLESRGLQVTVADARFCKPLDRALIRSLAKSHEVLVTVEKGSIGGFGSHVVQFMALDGLLDGKLKWRPIVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNILGQTREAL 715          
BLAST of DN618063 vs. ExPASy Swiss-Prot
Match: DXS_RHOCS (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=dxs PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 4.600e-30
Identity = 65/109 (59.63%), Postives = 83/109 (76.15%), Query Frame = -1
Query:  271 VLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLG 597
            +LAA  L ++ +S TVADARF KP+D  LIR+LA +HE+LITVEEGS+GGFGS+V HFL  SG+LD  LK+R MVLPD + D  +PA Q +E+GL++RHI  T L  LG
Sbjct:  522 LLAAEDLNARGLSTTVADARFAKPIDEALIRRLAQDHEVLITVEEGSIGGFGSYVLHFLAQSGLLDQGLKVRPMVLPDIFQDQDAPAKQYDEAGLNARHIVETALKALG 630          
BLAST of DN618063 vs. ExPASy Swiss-Prot
Match: DXS_BEII9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=dxs PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.480e-28
Identity = 67/113 (59.29%), Postives = 79/113 (69.91%), Query Frame = -1
Query:  256 AANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGP-LKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 591
            AA  L S  ISVTVADARF KPLD DL+R+LA  HE+LIT+EEGSVGGFGS V   L   G+LDG  LK RSMVLPD ++DH  P     ++GL ++ I A VL+ LGR  EA
Sbjct:  524 AAEQLASYGISVTVADARFAKPLDLDLVRRLAKNHEVLITIEEGSVGGFGSFVMQALAEEGLLDGTGLKFRSMVLPDTFLDHDKPEKLYAQAGLDAKGIVAKVLATLGRENEA 636          
BLAST of DN618063 vs. ExPASy Swiss-Prot
Match: DXS_MESSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhizobium sp. (strain BNC1) GN=dxs PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.591e-28
Identity = 58/114 (50.88%), Postives = 82/114 (71.93%), Query Frame = -1
Query:  256 VLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEA 597
            ++AA  L++  +S TVADARF KPLD DLIR+LA EHE+L+TVEEGS+GGFG+HV HFL   G+L+  LK+R +V+PD ++D   P     ++GL +  I  TV + LG+ ++A
Sbjct:  534 MIAAEELEAAGLSTTVADARFAKPLDADLIRRLAREHEVLVTVEEGSIGGFGAHVLHFLAHEGLLENGLKVRPLVMPDIFMDQAKPEKMYAKAGLDAAGIVKTVFAALGQAEQA 647          
BLAST of DN618063 vs. ExPASy Swiss-Prot
Match: DXS_RHIL3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dxs PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.137e-27
Identity = 62/110 (56.36%), Postives = 76/110 (69.09%), Query Frame = -1
Query:  268 VLAANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 597
            +LAA  L +  +S TVADARF KPLD DLIRQLA  HE++ITVEEGS+GGFGSHV HFL   G+LD  LKLRS+V+PD +++   P      +GL    I +TV   LGR
Sbjct:  521 LLAAEDLDAAGLSTTVADARFAKPLDHDLIRQLARHHEMVITVEEGSIGGFGSHVMHFLATEGLLDNGLKLRSLVMPDIWMEQAKPEAMNAHAGLDRAGIVSTVFKALGR 630          
BLAST of DN618063 vs. ExPASy Swiss-Prot
Match: DXS_MAGSA (1-deoxy-D-xylulose-5-phosphate synthase OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=dxs PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.137e-27
Identity = 61/113 (53.98%), Postives = 81/113 (71.68%), Query Frame = -1
Query:  253 AANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEAL 591
            AA+ L ++ ++ TV DARF KPLD +LI +LA EHE+LITVEEGSVGGFGSHV H L   G LD  LK+R + LPD +++H +PA Q E+ GL++  I ATVL+ LG  +  +
Sbjct:  530 AADELAARGLAPTVVDARFMKPLDEELILRLAREHEVLITVEEGSVGGFGSHVLHLLASKGALDNGLKVRPLALPDVFVEHDAPAIQYEKIGLNASGIVATVLATLGEARSVV 642          
BLAST of DN618063 vs. ExPASy Swiss-Prot
Match: DXS_HYPNA (1-deoxy-D-xylulose-5-phosphate synthase OS=Hyphomonas neptunium (strain ATCC 15444) GN=dxs PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 4.760e-27
Identity = 60/108 (55.56%), Postives = 77/108 (71.30%), Query Frame = -1
Query:  268 AANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGR 591
            AA ML +Q +S TVADARF KPLD +LI +LA EHE+L+T+EEGS GGFGS V   L   G LD  LK+R M LPD + DH +PA   +++GL++RHI+A  +  LGR
Sbjct:  521 AAEMLAAQGLSATVADARFAKPLDNELIERLAREHEVLVTIEEGSRGGFGSFVLEHLANCGGLDAGLKVRVMTLPDVFQDHDTPAAMYDQAGLTARHIAARAIEALGR 628          
BLAST of DN618063 vs. ExPASy Swiss-Prot
Match: DXS_BRASB (1-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=dxs PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 8.120e-27
Identity = 59/115 (51.30%), Postives = 80/115 (69.57%), Query Frame = -1
Query:  247 AANMLKSQDISVTVADARFCKPLDTDLIRQLANEHEILITVEEGSVGGFGSHVCHFLTLSGILDGPLKLRSMVLPDRYIDHGSPADQLEESGLSSRHISATVLSLLGRPKEALLI 591
            AA+ L +  +S ++ADARF KPLD +L+ +LA EHEILIT+EEGS+GGFGSHV  +L   G+LDG LK+RSMVLPD + DH +PA     +GL ++ I   V   LG+   A ++
Sbjct:  524 AADELAAHGLSASIADARFMKPLDEELVLKLAREHEILITIEEGSIGGFGSHVMQYLADQGMLDGGLKMRSMVLPDEFQDHDTPAAMYARAGLDAKGIVRKVFEALGKDYTAEVV 638          
The following BLAST results are available for this feature:
BLAST of DN618063 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 189
Match NameE-valueIdentityDescription
DXS_ARATH1.863e-3969.91Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_ORYSJ1.208e-3865.22Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_CAPAN2.060e-3866.37Probable 1-deoxy-D-xylulose-5-phosphate synthase, ... [more]
DXS_RHOCS4.600e-3059.631-deoxy-D-xylulose-5-phosphate synthase OS=Rhodosp... [more]
DXS_BEII91.480e-2859.291-deoxy-D-xylulose-5-phosphate synthase OS=Beijeri... [more]
DXS_MESSB9.591e-2850.881-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhi... [more]
DXS_RHIL32.137e-2756.361-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_MAGSA2.137e-2753.981-deoxy-D-xylulose-5-phosphate synthase OS=Magneto... [more]
DXS_HYPNA4.760e-2755.561-deoxy-D-xylulose-5-phosphate synthase OS=Hyphomo... [more]
DXS_BRASB8.120e-2751.301-deoxy-D-xylulose-5-phosphate synthase OS=Bradyrh... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02A24_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002A24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618063 ID=DN618063; Name=DN618063; organism=Citrus sinensis; type=EST; length=597bp
CCCCCCTTTTTACGGTGGAAGATCAATGGGCCTTGTATCTTTATTACAAG
AAAAAATTGTGAATGTACAGAAACAACAAAAGGCTTGACCATTACATTTA
TAATCCCACGGTAATGCTTCATGGTTACAGGGGATATGAAGGTAAAGATT
CTAAGAGTTGGACCTTATAGTGTATAACACCCCCAACTTGGAATTGTAAG
TTGGATCCGAAGGGCAAGATGTTGTTTGATTTTGTATGATTACTTAAATC
AGAAGGGCTTCTTTTGGCCTCCCTAAGAGAGATAAGACTGTTGCAGAGAT
ATGCCTTGAGGAGAGCCCTGATTCTTCAAGCTGATCGGCTGGTGATCCAT
GGTCAATGTATCTATCAGGAAGCACCATTGATCTCAACTTGAGAGGTCCA
TCCAGAATGCCACTTAAGGTTAGAAAGTGACATACATGAGAGCCAAAGCC
TCCCACAGAACCCTCTTCCACAGTAATTAGGATTTCATGCTCATTGGCCA
ACTGTCTAATGAGGTCTGTATCCAAAGGTTTGCAAAATCTTGCATCAGCC
ACTGTCACGGAAATGTCTTGGCTCTTAAGCATGTTCGCAGCTAGCAC
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