DN618058

Overview
NameDN618058
Unique NameDN618058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length391
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig524 contig Csv1_Contig524:63..453. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN618058 vs. ExPASy Swiss-Prot
Match: VATC_ARATH (V-type proton ATPase subunit C OS=Arabidopsis thaliana GN=VHA-C PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 6.474e-39
Identity = 77/103 (74.76%), Postives = 89/103 (86.41%), Query Frame = 2 
Query:   83 MASRYWVVSLPVQNSAASVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLT 391
            M SRYWVVSLPV++SA+S+WNRLQEQISKHSFDTP+YRFNIPNLRVGT           +KSNSFVE VS KIRRQIEELER+SG+ES++L+VDGVPVD+YLT
Sbjct:    1 MTSRYWVVSLPVKDSASSLWNRLQEQISKHSFDTPVYRFNIPNLRVGTLDSLLALGDDLLKSNSFVEGVSQKIRRQIEELERISGVESNALTVDGVPVDSYLT 103
[Close]
BLAST of DN618058 vs. ExPASy Swiss-Prot
Match: VATC_HORVU (V-type proton ATPase subunit C OS=Hordeum vulgare GN=VATC PE=1 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 1.224e-29
Identity = 65/108 (60.19%), Postives = 79/108 (73.15%), Query Frame = 2 
Query:   83 MASRYWVVSLPV--QNSAA---SVWNRLQEQISKHSFDTPLYRFNIPNLRVGTXXXXXXXXXXXVKSNSFVESVSHKIRRQIEELERVSGIESSSLSVDGVPVDTYLT 391
            MA+RYW+ +LPV   N AA   ++W RLQE IS+HSFDTPLYRF +P+LR GT           VKSN F+E VSHKIRRQIE+LER  G+E  +L+VDGVPVD+YLT
Sbjct:    1 MATRYWIAALPVADDNVAAGKTALWARLQEAISRHSFDTPLYRFTVPDLRPGTLDSLLALSDDLVKSNIFIEGVSHKIRRQIEDLERAGGVEPGTLTVDGVPVDSYLT 108
The following BLAST results are available for this feature:
BLAST of DN618058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
VATC_ARATH6.474e-3974.76V-type proton ATPase subunit C OS=Arabidopsis thal... [more]
VATC_HORVU1.224e-2960.19V-type proton ATPase subunit C OS=Hordeum vulgare ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02A21_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002A21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618058 ID=DN618058; Name=DN618058; organism=Citrus sinensis; type=EST; length=391bp
GGCATATAGGTACTGGGTGAAACAACAAGCTCCATTATTAACGGACACTC
AGAGCGAAAGTGAGAGTGAAAGTGATCGTGAAATGGCATCAAGGTACTGG
GTGGTGTCTCTTCCAGTACAAAATTCAGCCGCTTCTGTTTGGAATCGATT
ACAGGAACAAATCTCTAAACATTCATTTGACACTCCTCTTTACAGGTTTA
ATATCCCCAACCTCCGTGTTGGAACCCTAGATTCACTCCTTGCACTTAGC
GATGATCTCGTGAAGTCAAATAGCTTTGTTGAATCAGTATCTCACAAGAT
CAGGCGACAGATTGAGGAACTGGAGAGGGTATCAGGCATAGAGAGTAGTT
CTTTGAGTGTTGATGGAGTACCAGTTGATACTTATCTCACT
back to top