DN618047

Overview
NameDN618047
Unique NameDN618047
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4257 contig Csv1_Contig4257:359..989. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618047 vs. ExPASy Swiss-Prot
Match: EIF3K_ORYSJ (Eukaryotic translation initiation factor 3 subunit K OS=Oryza sativa subsp. japonica GN=TIF3K1 PE=2 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 8.331e-65
Identity = 117/151 (77.48%), Postives = 135/151 (89.40%), Query Frame = -1
Query:  180 AMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRIFPIL 632
            AMP PDFSLCLFLIPE VQME+QFKTLIVLSHYLET RFR FWDEA+K+RNI++ VPGFEQAIQS+AIHVLSLTYQK+PR VLAEAIN++GL+LDKFLEH  AN GW++E   + SQLIVLP NEFNHPELKKN A+++P EH+TRIFP+L
Sbjct:   76 AMPGPDFSLCLFLIPEHVQMEEQFKTLIVLSHYLETARFRQFWDEASKNRNILDVVPGFEQAIQSYAIHVLSLTYQKVPRPVLAEAINIEGLALDKFLEHHIANSGWVIE-KGARSQLIVLPRNEFNHPELKKNTAETVPFEHVTRIFPVL 225          
BLAST of DN618047 vs. ExPASy Swiss-Prot
Match: EIF3K_ARATH (Eukaryotic translation initiation factor 3 subunit K OS=Arabidopsis thaliana GN=TIF3K1 PE=2 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.471e-61
Identity = 112/152 (73.68%), Postives = 133/152 (87.50%), Query Frame = -1
Query:  177 AMPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRIFPILG 632
            AMP PDFSLCLFLIPERVQME+QFK+LIVLSHYLETGRF+ FWDEAAK+R+I+EAVPGFEQAIQ++A H+LSL+YQK+PR+VLAEA+N+ G SLDKF+E Q  N GWI+E +  +   IVLP NEFNHPELKKN  +++PLEHI RIFPILG
Sbjct:   78 AMPTPDFSLCLFLIPERVQMEEQFKSLIVLSHYLETGRFQQFWDEAAKNRHILEAVPGFEQAIQAYASHLLSLSYQKVPRSVLAEAVNMDGASLDKFIEQQVTNSGWIVEKEGGS---IVLPQNEFNHPELKKNTGENVPLEHIARIFPILG 226          
BLAST of DN618047 vs. ExPASy Swiss-Prot
Match: EIF3K_DANRE (Eukaryotic translation initiation factor 3 subunit K OS=Danio rerio GN=eif3k PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 7.401e-13
Identity = 42/146 (28.77%), Postives = 75/146 (51.37%), Query Frame = -1
Query:  192 MPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 629
            +P  DF+LC  +I +  Q E   + ++ L + LET  F+ FW    ++R++++ + GFE++++ F  HV+ +TYQ I   +LAE +   G  LD  ++      GW    +    Q+ +    E   P   KN+ + I  E ++ I
Sbjct:   78 LPHTDFTLCKCMIDQTHQEERPIRQILYLGNLLETCHFQSFWASLEENRDLIDGITGFEESVRKFICHVVGITYQNIEYRLLAEML---GDPLDTQVKVWMNKYGWT---ENEDGQIFIHNQEESVKP---KNIVEKIDFESVSSI 214          
BLAST of DN618047 vs. ExPASy Swiss-Prot
Match: EIF3K_BOVIN (Eukaryotic translation initiation factor 3 subunit K OS=Bos taurus GN=EIF3K PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.649e-12
Identity = 44/146 (30.14%), Postives = 75/146 (51.37%), Query Frame = -1
Query:  192 MPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 629
            +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    ++ +++E + GFE +++ F  HV+ +TYQ I R +LAE +   G   D  L+   +  GW    D+S  Q+ +    E   P   KN+ + I  + ++ I
Sbjct:   77 LPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLTDSQLKVWMSKYGW--SADES-GQIFICSQEESIKP---KNIVEKIDFDSVSSI 213          
BLAST of DN618047 vs. ExPASy Swiss-Prot
Match: EIF3K_MOUSE (Eukaryotic translation initiation factor 3 subunit K OS=Mus musculus GN=Eif3k PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.153e-12
Identity = 44/146 (30.14%), Postives = 75/146 (51.37%), Query Frame = -1
Query:  192 MPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 629
            +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    ++ +++E + GFE +++ F  HV+ +TYQ I R +LAE +   G   D  L+   +  GW    D+S  Q+ +    E   P   KN+ + I  + ++ I
Sbjct:   77 LPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLTDNQLKVWMSKYGW--SADES-GQVFICSQEESIKP---KNIVEKIDFDSVSSI 213          
BLAST of DN618047 vs. ExPASy Swiss-Prot
Match: EIF3K_HUMAN (Eukaryotic translation initiation factor 3 subunit K OS=Homo sapiens GN=EIF3K PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.153e-12
Identity = 44/146 (30.14%), Postives = 75/146 (51.37%), Query Frame = -1
Query:  192 MPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 629
            +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    ++ +++E + GFE +++ F  HV+ +TYQ I R +LAE +   G   D  L+   +  GW    D+S  Q+ +    E   P   KN+ + I  + ++ I
Sbjct:   77 LPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLSDSQLKVWMSKYGW--SADES-GQIFICSQEESIKP---KNIVEKIDFDSVSSI 213          
BLAST of DN618047 vs. ExPASy Swiss-Prot
Match: EIF3K_XENLA (Eukaryotic translation initiation factor 3 subunit K OS=Xenopus laevis GN=eif3k PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.109e-11
Identity = 41/146 (28.08%), Postives = 73/146 (50.00%), Query Frame = -1
Query:  192 MPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 629
            +P  DF+LC  +I +  Q +   + ++ L   LET  F+ FW    ++ ++++ V GFE +++ F  HV+ +TYQ I R +LAE +   G   +  L    +  GWI   +    ++ V    E   P   KN+ + I  + ++ I
Sbjct:   77 LPHTDFTLCKCMIDQAHQEDRPIRQILYLGDLLETCHFQSFWQALDENLDLIDGVTGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLSEPQLRVWMSKYGWI---ESENGKIFVCNQEENIKP---KNIVEKIDFDSVSGI 213          
BLAST of DN618047 vs. ExPASy Swiss-Prot
Match: EIF3K_XENTR (Eukaryotic translation initiation factor 3 subunit K OS=Xenopus tropicalis GN=eif3k PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.061e-11
Identity = 40/146 (27.40%), Postives = 73/146 (50.00%), Query Frame = -1
Query:  192 MPAPDFSLCLFLIPERVQMEDQFKTLIVLSHYLETGRFRHFWDEAAKHRNIVEAVPGFEQAIQSFAIHVLSLTYQKIPRTVLAEAINLKGLSLDKFLEHQKANCGWILEGDQSTSQLIVLPPNEFNHPELKKNVADSIPLEHITRI 629
            +P  DF+LC  +I +  Q E   + ++ L   LET  F+ FW    ++ ++++ + GFE +++ F  HV+ +TYQ I R +LAE +   G   +  L    +  GW+   +    ++ V    E   P   KN+ + I  + ++ I
Sbjct:   77 LPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQSFWQALDENLDLIDGITGFEDSVRKFICHVVGITYQHIDRWLLAEML---GDLSEPQLRVWMSKYGWM---ESENGKIFVCNQEENIKP---KNIVEKIDFDSVSGI 213          
The following BLAST results are available for this feature:
BLAST of DN618047 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
EIF3K_ORYSJ8.331e-6577.48Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_ARATH1.471e-6173.68Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_DANRE7.401e-1328.77Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_BOVIN1.649e-1230.14Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_MOUSE2.153e-1230.14Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_HUMAN2.153e-1230.14Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_XENLA3.109e-1128.08Eukaryotic translation initiation factor 3 subunit... [more]
EIF3K_XENTR4.061e-1127.40Eukaryotic translation initiation factor 3 subunit... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_02A16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002A16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618047 ID=DN618047; Name=DN618047; organism=Citrus sinensis; type=EST; length=632bp
TTTTGCCAATAATAACATTTGTGTCTCATCAATTCCTCCAAGCCACTTCG
GGCTATGTTTTCAACATAAACACAAAAAGAGATTACAGCAGTCCCCAAAA
TTCACTGCAAGAGTGCTATAGCAGCTGGTTAAAACAAATGAAAATTTACC
AAATGCCAGGATTTGAACTTCAATCAACCAAGAATGGGAAATATGCGGGT
AATGTGTTCTAACGGGATGCTATCAGCAACATTCTTCTTCAGCTCGGGAT
GATTAAATTCATTAGGCGGCAGGACAATCAATTGGCTCGTACTTTGATCT
CCTTCAAGAATCCAGCCACAATTGGCCTTCTGGTGTTCAAGGAATTTGTC
CAGAGATAGACCTTTAAGATTGATAGCCTCGGCAAGCACAGTCCTTGGAA
TCTTTTGATATGTCAATGAAAGGACATGAATTGCAAAGGACTGAATTGCT
TGCTCAAAACCTGGCACGGCTTCAACTATGTTACGATGCTTAGCTGCTTC
ATCCCAGAAATGGCGGAACCTTCCTGTCTCCAAGTAGTGAGAGAGGACAA
TCAGCGTCTTGAATTGATCCTCCATTTGCACTCTTTCTGGGATCAAAAAG
AGACAGAGACTGAAATCTGGAGCTGGCATTGC
back to top