DN618045

Overview
NameDN618045
Unique NameDN618045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN618045_ssr56 microsatellite DN618045_ssr56:56..67. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9154 contig Csv1_Contig9154:547..1176. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN618045 vs. ExPASy Swiss-Prot
Match: UGDH_SOYBN (UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 2.674e-71
Identity = 123/134 (91.79%), Postives = 132/134 (98.51%), Query Frame = -1
Query:  231 IDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 632
            IDVC+GLLGDKA LSIYDPQVTEDQIQRDL+MNKFDWDHP+HLQP SPTTVK+VSVVWDAYEATKDAHG+CILTEWDEFKTLDYQ+I+DNMQKPAFVFDGRN+VDA+KLREIGFIVYSIGKPLDPWLKDMPAVA
Sbjct:  347 IDVCQGLLGDKANLSIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGLCILTEWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDPWLKDMPAVA 480          
BLAST of DN618045 vs. ExPASy Swiss-Prot
Match: UGDH2_ARATH (Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.242e-68
Identity = 116/132 (87.88%), Postives = 128/132 (96.97%), Query Frame = -1
Query:  237 IDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPA 632
            IDVCKGLLGDKA++SIYDPQVTE+QIQRDL+M KFDWDHPLHLQPMSPTTVKQVSV WDAYEATKDAH VC+LTEWDEFK+LDYQ+I+DNMQKPAF+FDGRN+++ NKLREIGFIVYSIGKPLDPWLKDMPA
Sbjct:  347 IDVCKGLLGDKAQISIYDPQVTEEQIQRDLSMKKFDWDHPLHLQPMSPTTVKQVSVTWDAYEATKDAHAVCVLTEWDEFKSLDYQKIFDNMQKPAFIFDGRNIMNVNKLREIGFIVYSIGKPLDPWLKDMPA 478          
BLAST of DN618045 vs. ExPASy Swiss-Prot
Match: UGDH1_ARATH (Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.119e-68
Identity = 118/134 (88.06%), Postives = 128/134 (95.52%), Query Frame = -1
Query:  231 IDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLDPWLKDMPAVA 632
            IDVCKGLL DKARLSIYDPQVTEDQIQRDL+MNKFDWDHPLHLQPMSPTTVKQV+V WDAYEATKDAHG+CI+TEWDEFK LD+Q+I+DNMQKPAFVFDGRN+++  KLREIGFIVYSIGKPLD WLKDMPAVA
Sbjct:  347 IDVCKGLLEDKARLSIYDPQVTEDQIQRDLSMNKFDWDHPLHLQPMSPTTVKQVTVTWDAYEATKDAHGICIMTEWDEFKNLDFQKIFDNMQKPAFVFDGRNIMNLQKLREIGFIVYSIGKPLDDWLKDMPAVA 480          
BLAST of DN618045 vs. ExPASy Swiss-Prot
Match: UGDH_DROME (UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.139e-21
Identity = 57/122 (46.72%), Postives = 77/122 (63.11%), Query Frame = -1
Query:  270 IDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQ-VSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGK 632
            I VC+ LL + A L IYDP+V  +QI  DLT       HP   +  SP  VK+ V +  D Y A +  H + I TEWDEF  LD++RIY +M KPA++FDGR ++D  +L++IGF V +IGK
Sbjct:  347 ITVCQTLLEEGAALDIYDPKVEPEQIIDDLT-------HPSVTE--SPEKVKKAVQIHSDPYSAVRATHALVICTEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTIGK 459          
BLAST of DN618045 vs. ExPASy Swiss-Prot
Match: UGDH_CHICK (UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.026e-19
Identity = 59/146 (40.41%), Postives = 83/146 (56.85%), Query Frame = -1
Query:  201 IDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVD--ANKLREIGFIVYSIGKPLDPWLKDMPAVA*KRRQWACSC 632
            I + K L+ + A+L IYDP+V ++QI  DL+      D+ +          + V++  D YEA   AH + I TEWD FK LDY+RI+  M KPAF+FDGR V+D   N+L+ IGF + +IGK           V+ KR  +A SC
Sbjct:  351 IYISKYLMDEGAKLHIYDPKVPKEQIILDLSHPGVSEDNQVS---------RLVTISQDPYEACDGAHALVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDDLHNELQVIGFQIETIGK----------KVSAKRIPFASSC 477          
BLAST of DN618045 vs. ExPASy Swiss-Prot
Match: UGDH_BOVIN (UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.179e-18
Identity = 54/123 (43.90%), Postives = 72/123 (58.54%), Query Frame = -1
Query:  270 IDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 632
            I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH V I TEWD FK LDY+RI+  M KPAF+FDGR V+D   N+L+ IGF + +IGK
Sbjct:  351 IYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSKDDQV---------ARLVTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          
BLAST of DN618045 vs. ExPASy Swiss-Prot
Match: UGDH_PONAB (UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.540e-18
Identity = 54/123 (43.90%), Postives = 72/123 (58.54%), Query Frame = -1
Query:  270 IDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 632
            I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH V I TEWD FK LDY+RI+  M KPAF+FDGR V+D   N+L+ IGF + +IGK
Sbjct:  351 IYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          
BLAST of DN618045 vs. ExPASy Swiss-Prot
Match: UGDH_HUMAN (UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.540e-18
Identity = 54/123 (43.90%), Postives = 72/123 (58.54%), Query Frame = -1
Query:  270 IDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 632
            I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH V I TEWD FK LDY+RI+  M KPAF+FDGR V+D   N+L+ IGF + +IGK
Sbjct:  351 IYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          
BLAST of DN618045 vs. ExPASy Swiss-Prot
Match: UGDH_CAEEL (UDP-glucose 6-dehydrogenase OS=Caenorhabditis elegans GN=sqv-4 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.011e-18
Identity = 49/124 (39.52%), Postives = 72/124 (58.06%), Query Frame = -1
Query:  261 IDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDANKLREIGFIVYSIGKPLD 632
            I V K L+ + A+LS+YDP+V + Q+  DL       D             + ++V  D Y A + AH + +LTEWDEF  L+Y +I+++MQ PA +FDGR ++D   LREIGF  ++IG   D
Sbjct:  358 IHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQD-----------VERLITVESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPD 470          
BLAST of DN618045 vs. ExPASy Swiss-Prot
Match: UGDH_RAT (UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.430e-18
Identity = 53/123 (43.09%), Postives = 72/123 (58.54%), Query Frame = -1
Query:  270 IDVCKGLLGDKARLSIYDPQVTEDQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVVWDAYEATKDAHGVCILTEWDEFKTLDYQRIYDNMQKPAFVFDGRNVVDA--NKLREIGFIVYSIGK 632
            I + K L+ + A L IYDP+V  +QI  DL+      D  +          + V++  D YEA   AH + I TEWD FK LDY+RI+  M KPAF+FDGR V+D   N+L+ IGF + +IGK
Sbjct:  351 IYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSADDQVS---------RLVTISKDPYEACDGAHALVICTEWDMFKELDYERIHKRMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464          
The following BLAST results are available for this feature:
BLAST of DN618045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
UGDH_SOYBN2.674e-7191.79UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV... [more]
UGDH2_ARATH1.242e-6887.88Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidop... [more]
UGDH1_ARATH2.119e-6888.06Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidop... [more]
UGDH_DROME1.139e-2146.72UDP-glucose 6-dehydrogenase OS=Drosophila melanoga... [more]
UGDH_CHICK9.026e-1940.41UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UG... [more]
UGDH_BOVIN1.179e-1843.90UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH ... [more]
UGDH_PONAB1.540e-1843.90UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGD... [more]
UGDH_HUMAN1.540e-1843.90UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGD... [more]
UGDH_CAEEL2.011e-1839.52UDP-glucose 6-dehydrogenase OS=Caenorhabditis eleg... [more]
UGDH_RAT3.430e-1843.09UDP-glucose 6-dehydrogenase OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_02A15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0002A15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618045 ID=DN618045; Name=DN618045; organism=Citrus sinensis; type=EST; length=632bp
TCGTAACAGGATTAAATCAAATAAAAATCAATATGAGTCTTCTAACAAAC
AAGTAACAGACAGACAGTAGTATCATCAAATAAAGTGATAAGGCAAAAAC
ATAGAGCCTCTTAGCAAAAGCAAAGGCACAACAAAAACTCATCAAAATAT
AGTAAAGAATTGAGCTGACTTCTTCATCATCTATAATCTGATGCCCGATG
ACACGAGCATGCCCATTGGCGTCTCTTTTATGCAACAGCCGGCATGTCCT
TCAACCATGGATCGAGTGGCTTACCAATGGAGTACACGATGAAACCAATC
TCCCTCAACTTGTTGGCATCAACAACATTCCTGCCATCAAACACGAATGC
TGGTTTCTGCATGTTGTCATATATCCTCTGATAGTCAAGAGTCTTGAACT
CATCCCACTCGGTCAAGATGCAGACACCATGGGCATCTTTTGTTGCTTCA
TAGGCATCCCAGACCACGCTCACTTGCTTCACCGTGGTGGGACTCATTGG
CTGGAGGTGAAGAGGATGGTCCCAGTCAAACTTGTTCATTGTAAGGTCCC
TCTGGATCTGGTCCTCGGTGACCTGTGGGTCGTATATACTCAACCGAGCT
TTGTCTCCCAAAAGCCCCTTGCAGACATCAAT
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