DN618002

Overview
NameDN618002
Unique NameDN618002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN618002_ssr603 microsatellite DN618002_ssr603:603..618. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7491 contig Csv1_Contig7491:45..732. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN618002 vs. ExPASy Swiss-Prot
Match: COPT1_ARATH (Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 1.734e-29
Identity = 63/123 (51.22%), Postives = 82/123 (66.67%), Query Frame = 3 
Query:  165 FFWGKNSEILFSGWPGTRSGMYXXXXXXXXXXXXXXXXXSHCKLMKP---DANHVAAGLIQTLLHAIRVGLAFLVMLALMSFNGGVFLVAVAGHTFGFFIFGSRVFNKSSPPPKTSDLPPMSC 524
            FFWGKN+E+LFSGWPGT SGMY                 +H  L++    D+ + AAGLIQT ++ +R+GLA+LVMLA+MSFN GVFLVA+AGH  GF +FGS+ F  +S   KT+ +PP  C
Sbjct:   46 FFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRAAGLIQTAVYTLRIGLAYLVMLAVMSFNAGVFLVALAGHAVGFMLFGSQTFRNTSDDRKTNYVPPSGC 168
The following BLAST results are available for this feature:
BLAST of DN618002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
COPT1_ARATH1.734e-2951.22Copper transporter 1 OS=Arabidopsis thaliana GN=CO... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01P17_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001P17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN618002 ID=DN618002; Name=DN618002; organism=Citrus sinensis; type=EST; length=688bp
GAAAGAAACTTTCAATAAAAGACTCCCAAGAGAGATCAGCAAACATTAGC
AAAGCCATGGATGGCATGAATCATGATCATGGAAGCATGTCACCACCCAT
GTCAATGAACAACACCAATAACACAGGGACGATGATGCATCATCACAACA
TGATGCACATGACGTTTTTCTGGGGCAAGAATTCTGAAATTCTCTTCTCA
GGCTGGCCTGGAACAAGATCAGGAATGTATGCCTTAGCTTTGATTGTTGT
GTTTGTGTTGGCTGTGTTGGTTGAGTGGCTCTCTCACTGCAAATTGATGA
AGCCTGATGCAAATCATGTGGCTGCTGGTTTGATTCAGACTCTTTTACAT
GCAATCAGGGTTGGACTTGCTTTCTTGGTGATGCTTGCTCTTATGTCCTT
TAATGGAGGTGTGTTTTTGGTGGCTGTTGCTGGTCATACGTTTGGATTCT
TTATTTTTGGCAGCAGGGTTTTTAATAAATCATCACCCCCTCCAAAAACC
TCTGATCTTCCTCCCATGAGTTGTTGATACAATTAATGGCTGATTACTAA
GAGTTAAGTATGTTCTTGAGTTTGGCTTTGTAGTTTATCTTGTAACTCTT
AATTTCTTTCTTTCTTTCTCCTCTCTGAAACTATCTGTAGAAACTGAATA
TGAAGAAATAGTATTGTGGGTGAAAAAAAAAAAAAAAA
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