DN617985

Overview
NameDN617985
Unique NameDN617985
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5823 contig Csv1_Contig5823:1858..2435. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617985 vs. ExPASy Swiss-Prot
Match: CID13_SCHPO (Poly(A) RNA polymerase cid13 OS=Schizosaccharomyces pombe GN=cid13 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.480e-16
Identity = 37/111 (33.33%), Postives = 68/111 (61.26%), Query Frame = -2
Query:  245 IECAYFDQVDKLHGFGSRNKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPN 577
            ++ ++FD  D +HGFG +N+ES+G L   FF ++ Y  DY   V+S+R G+ +SK+ K W  ++ N    +C+E+PF  + +L    D+ ++K ++ EF R   ++ ++ N
Sbjct:  254 LDVSFFDDPDLVHGFGDKNEESLGILFVEFFRFFGYLFDYEHFVLSIRHGTFLSKRAKGWQFQLNN---FLCVEEPFHTSRNLANTADEITMKGIQLEFRRVFRLLAYNCN 361          
BLAST of DN617985 vs. ExPASy Swiss-Prot
Match: CID11_SCHPO (Poly(A) RNA polymerase cid11 OS=Schizosaccharomyces pombe GN=cid11 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.936e-16
Identity = 42/111 (37.84%), Postives = 66/111 (59.46%), Query Frame = -2
Query:  230 VDKLHGFGSR---NKESIGRLVWAFFNYWAYGHDYASNVISVRTGSTISKQEKDWTRRIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIMQHDPNPCVKL 553
            VD + GF  +   NK S+GRL+  FF Y+ +  +Y  +V+SVR+G+ ++KQEK W   + N    +C+E+PF    +L    D  S+K L+ EF+RA  +M  + N C +L
Sbjct:  247 VDDIVGFKEKATLNKTSLGRLLIDFFYYYGFSFNYLDSVVSVRSGTVLNKQEKGWAMEVNNS---LCVEEPFNTARNLANTADNPSVKGLQSEFQRAFRLMSEN-NACERL 353          
BLAST of DN617985 vs. ExPASy Swiss-Prot
Match: CID1_SCHPO (Poly(A) RNA polymerase protein cid1 OS=Schizosaccharomyces pombe GN=cid1 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 9.806e-11
Identity = 39/114 (34.21%), Postives = 63/114 (55.26%), Query Frame = -2
Query:  224 SRNKESIGRLVWAFFNYWAYGHDYASNVISVRT-GSTISKQEKDWTR---------RIGNDRHLICIEDPFEVTHDLGRVVDKFSIKVLREEFERAAEIM--QHDPNPCVKLFE 529
            S+N  S+G L+  FF ++AY  +    V++ R     ++KQEK WT          +I  DR+++ IEDPFE++H++GR V    +  +R EF  A+ ++  +  P P   LFE
Sbjct:  262 SQNYSSLGSLLHGFFRFYAYKFEPREKVVTFRRPDGYLTKQEKGWTSATEHTGSADQIIKDRYILAIEDPFEISHNVGRTVSSSGLYRIRGEFMAASRLLNSRSYPIPYDSLFE 375          
The following BLAST results are available for this feature:
BLAST of DN617985 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CID13_SCHPO3.480e-1633.33Poly(A) RNA polymerase cid13 OS=Schizosaccharomyce... [more]
CID11_SCHPO5.936e-1637.84Poly(A) RNA polymerase cid11 OS=Schizosaccharomyce... [more]
CID1_SCHPO9.806e-1134.21Poly(A) RNA polymerase protein cid1 OS=Schizosacch... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01P09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001P09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617985 ID=DN617985; Name=DN617985; organism=Citrus sinensis; type=EST; length=578bp
CGAAAATTACACTCACAGTACCCGCTTGGTAATTAAAATTGCAACTGTCG
GTTAAGCCAACAAGTTCTTTACACCCAAGGATATTTAAATAATAAGCTGA
AGCCCTAAATACAAAACTATAAAACACAAGACCATGGAACGGATGCTTAA
GGCTGATCAATCTCTTTTCATTGCAATTACATCTCTAACAAGTGTGCTGC
TTAAATCAACCAGGAACATAGGGTTCAAAGAGTTTCACACATGGATTTGG
ATCATGCTGCATGATTTCAGCAGCACGTTCAAACTCCTCCCTTAGAACTT
TTATGCTGAACTTGTCCACAACTCGACCAAGGTCGTGAGTCACCTCAAAG
GGATCCTCTATGCATATCAAATGACGGTCATTTCCAATCCTTCTTGTCCA
GTCCTTTTCTTGTTTGCTTATTGTACTTCCGGTGCGAACGGAAATAACGT
TGCTGGCATAATCATGACCATAAGCCCAGTAATTGAAAAATGCCCACACA
AGTCGACCAATACTTTCCTTGTTACGAGACCCAAATCCATGAAGTTTGTC
AACTTGATCAAAGTAAGCACATTCAATA
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