DN617983

Overview
NameDN617983
Unique NameDN617983
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length528
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617983 vs. ExPASy Swiss-Prot
Match: ARI2_ARATH (Probable E3 ubiquitin-protein ligase ARI2 OS=Arabidopsis thaliana GN=ARI2 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.718e-21
Identity = 46/87 (52.87%), Postives = 63/87 (72.41%), Query Frame = -1
Query:  268 KQNFFEDQQQQLETNIERLSLILEENFEKYSEHQLKDFRMRVITQSVTADYLCRNLYEWIETDLLGSLKHSVHKIAPFNSAAVEKAS 528
            KQN FEDQQQQLE N+E+LS  LEE F+++++ ++   R++VI  SV  D LC N+YE IE DLLGSL+  +H I P+ S  +E+AS
Sbjct:  437 KQNLFEDQQQQLEANVEKLSKFLEEPFDQFADDKVMQIRIQVINLSVAVDTLCENMYECIENDLLGSLQLGIHNITPYRSNGIERAS 523          
BLAST of DN617983 vs. ExPASy Swiss-Prot
Match: ARI1_ARATH (Probable E3 ubiquitin-protein ligase ARI1 OS=Arabidopsis thaliana GN=ARI1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.259e-19
Identity = 43/88 (48.86%), Postives = 65/88 (73.86%), Query Frame = -1
Query:  265 KQNFFEDQQQQLETNIERLSLILEENFEKYSEHQLKDFRMRVITQSVTADYLCRNLYEWIETDLLGSLKHSVHKIAPFNSAAVEKASK 528
            K+N FEDQQQQLE+N+E+LS  LEE F+++S  ++   R+++I  SV  D LC+ +YE IE DLLGSL+  +H I+P+ S  +E+A++
Sbjct:  436 KKNLFEDQQQQLESNVEKLSQFLEEPFDEFSNDKVMAIRIQIINLSVAVDTLCKKMYECIENDLLGSLQLGIHNISPYRSKGIEQAAQ 523          
BLAST of DN617983 vs. ExPASy Swiss-Prot
Match: ARI4_ARATH (Putative E3 ubiquitin-protein ligase ARI4 OS=Arabidopsis thaliana GN=ARI4 PE=5 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 5.848e-17
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = -1
Query:  265 KQNFFEDQQQQLETNIERLSLILEENFEKYSEHQLKDFRMRVITQSVTADYLCRNLYEWIETDLLGSLKHSVHKIAPFNSAAVEKASK 528
            K+N FEDQQQQLE N+ERLS ILEE F++Y   ++ +    +   +   D LC+ +YE IE +LLG L   +H IAP+ S  +E+A++
Sbjct:  432 KKNLFEDQQQQLEGNVERLSKILEEPFDEYDHEKVVEMMRHLTNLTAVVDNLCKEMYECIENELLGPLISGIHNIAPYRSKGIEQAAE 519          
BLAST of DN617983 vs. ExPASy Swiss-Prot
Match: ARI3_ARATH (Probable E3 ubiquitin-protein ligase ARI3 OS=Arabidopsis thaliana GN=ARI3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.790e-16
Identity = 38/88 (43.18%), Postives = 58/88 (65.91%), Query Frame = -1
Query:  265 KQNFFEDQQQQLETNIERLSLILEENFEKYSEHQLKDFRMRVITQSVTADYLCRNLYEWIETDLLGSLKHSVHKIAPFNSAAVEKASK 528
            K+N FEDQQQQLE N+E+LS ILEE F++Y   ++ +    +   +   D LC+ +YE IE +LLG ++   H IAP+ S  +E+A++
Sbjct:  436 KKNLFEDQQQQLEGNVEKLSKILEEPFDEYDHEKVVEMMRHLTNLTAVVDNLCKEMYECIENELLGPIQFGNHNIAPYRSKGIEQATE 523          
The following BLAST results are available for this feature:
BLAST of DN617983 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
ARI2_ARATH8.718e-2152.87Probable E3 ubiquitin-protein ligase ARI2 OS=Arabi... [more]
ARI1_ARATH1.259e-1948.86Probable E3 ubiquitin-protein ligase ARI1 OS=Arabi... [more]
ARI4_ARATH5.848e-1745.45Putative E3 ubiquitin-protein ligase ARI4 OS=Arabi... [more]
ARI3_ARATH3.790e-1643.18Probable E3 ubiquitin-protein ligase ARI3 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01P08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617983 ID=DN617983; Name=DN617983; organism=Citrus sinensis; type=EST; length=528bp
GCAGCCACAAATCTTATTCTAACATGAGCATTTCATAATAACGAAGGCTT
TTTATTAAACTCCATATGAAAGAAACGATATTAGAAAATGAGCAAAATTA
TGATGAGAAGAAGCAATGGGAAAAGAAGAGTTGGTTGATGAAAGTATAAC
TATTTACCCAAAAAAAAGGGCAATTTACTGTAAAATGATTCCGTTCTCCT
TTGTCCCCAAATAGGTTTGTGTGTGTAGAGCTTTTTTATTATCTAAGTGT
CAACAATAAGGAATTTTTGAAGCTTTCTCTACAGCTGCTGAGTTGAAAGG
AGCTATTTTATGAACGGAATGCTTGAGAGAACCCAGTAGATCCGTTTCAA
TCCATTCGTACAAATTCCGGCAGAGATAATCAGCGGTGACTGATTGAGTA
ATGACCCTCATTCTGAAATCCTTAAGTTGGTGCTCGGAATATTTCTCAAA
ATTTTCTTCTAAAATCAATGAAAGCCTCTCAATGTTGGTCTCAAGCTGCT
GCTGTTGGTCCTCAAAAAAGTTTTGCTT
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