FC921930

Overview
NameFC921930
Unique NameFC921930
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length317
Libraries
Library NameType
RindPdigScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2776 contig Csv1_Contig2776:93..409. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC921930 vs. ExPASy Swiss-Prot
Match: HRD1_CAEBR (E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae GN=sel-11 PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 2.290e-20
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 3
Query:    3 HAFNSRRQFYPSMVYLSTSKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQSRREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVE 317
            +AF   +QFYPS+VYLS S  S+ +L   G+V++ +++QL+K +  G LR AE E L+E++   ++E   A T+FR DFS  F+     LL IK  HWLA  RV+
Sbjct:   22 NAFVINKQFYPSIVYLSKSNASMAVLYFQGIVLVYLMFQLLKSILFGDLRAAEAEHLSERTWHAVLETCLAFTVFRDDFSAMFVMQFIGLLFIKCFHWLADDRVD 126          
BLAST of FC921930 vs. ExPASy Swiss-Prot
Match: SYVN1_DANRE (E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 3.907e-20
Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = 3
Query:    3 HAFNSRRQFYPSMVYLSTSKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQSRREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVE 317
            HA+  + QFYP++VYL+ S  S+ +L     V++ +L +L++KVF G LR AE+E L E+S   + E   A T+FR DFS  F+A+ T LL +K  HWLA+ RV+
Sbjct:   21 HAYFLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKLMRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLAEDRVD 125          
BLAST of FC921930 vs. ExPASy Swiss-Prot
Match: HRD1_CAEEL (E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans GN=sel-11 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.102e-20
Identity = 45/105 (42.86%), Postives = 67/105 (63.81%), Query Frame = 3
Query:    3 HAFNSRRQFYPSMVYLSTSKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQSRREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVE 317
            +AF   +QFYPS+VYLS S  S+ ++   G+V++ +++QL+K +  G LR AE E L+E++   ++E   A T+FR DFS  F+     LL IK  HWLA  RV+
Sbjct:   22 NAFLINKQFYPSIVYLSKSNASMAVIYVQGIVLVYLMFQLLKSILFGDLRAAEAEHLSERTWHAVLETCLAFTVFRDDFSAIFVMQFIGLLFIKCFHWLADDRVD 126          
BLAST of FC921930 vs. ExPASy Swiss-Prot
Match: SYVNB_XENLA (E3 ubiquitin-protein ligase synoviolin-B OS=Xenopus laevis GN=syvn1-B PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.939e-19
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 3
Query:    3 HAFNSRRQFYPSMVYLSTSKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQSRREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVE 317
            HA+  + QFYP++VYL+ S  S+ +L     V++ +L + + KVF G LR AE+E L E+S   + E   A T+FR DFS  F+A+ T LL +K  HWLA+ RV+
Sbjct:   15 HAYYLKNQFYPTVVYLTKSSPSMAILYIQAFVLVFLLGKFMGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLAEDRVD 119          
BLAST of FC921930 vs. ExPASy Swiss-Prot
Match: SYVN1_MOUSE (E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 1.939e-19
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 3
Query:    3 HAFNSRRQFYPSMVYLSTSKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQSRREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVE 317
            HA+  + QFYP++VYL+ S  S+ +L     V++ +L +++ KVF G LR AE+E L E+S   + E   A T+FR DFS  F+A+ T LL +K  HWLA+ RV+
Sbjct:   21 HAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKVMGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLAEDRVD 125          
BLAST of FC921930 vs. ExPASy Swiss-Prot
Match: SYVN1_HUMAN (E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.939e-19
Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 3
Query:    3 HAFNSRRQFYPSMVYLSTSKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQSRREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVE 317
            HA+  + QFYP++VYL+ S  S+ +L     V++ +L +++ KVF G LR AE+E L E+S   + E   A T+FR DFS  F+A+ T LL +K  HWLA+ RV+
Sbjct:   21 HAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKVMGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLAEDRVD 125          
BLAST of FC921930 vs. ExPASy Swiss-Prot
Match: SYVNA_XENLA (E3 ubiquitin-protein ligase synoviolin-A OS=Xenopus laevis GN=syvn1-A PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.532e-19
Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 3
Query:    3 HAFNSRRQFYPSMVYLSTSKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQSRREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVE 317
            HA+  + QFYP++VYL+ S  S+ +L     V++ +L + + KVF G LR AE+E L E+S   + E   A T+FR DFS  F+A+ T LL +K  HWLA+ RV+
Sbjct:   15 HAYYLKNQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKFMGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLAEDRVD 119          
BLAST of FC921930 vs. ExPASy Swiss-Prot
Match: HRD1_DROME (E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.146e-18
Identity = 42/104 (40.38%), Postives = 69/104 (66.35%), Query Frame = 3
Query:    6 AFNSRRQFYPSMVYLSTSKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQSRREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVE 317
            A+  ++QFYP++VY++ S  S+ ++     VI+ +  +L+ K+FLG+LR AE E L E+    + E   A T+FR DF+  F+A+ T LL +K+ HWLA++RV+
Sbjct:   20 AYYQKQQFYPAVVYITKSNASMGVIYIQFFVIVFMFGKLLSKIFLGTLRAAEFEHLLERFWYALTETCLAFTVFRDDFNPRFVALFTVLLFLKSFHWLAEERVD 123          
The following BLAST results are available for this feature:
BLAST of FC921930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
HRD1_CAEBR2.290e-2043.81E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditi... [more]
SYVN1_DANRE3.907e-2044.76E3 ubiquitin-protein ligase synoviolin OS=Danio re... [more]
HRD1_CAEEL5.102e-2042.86E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditi... [more]
SYVNB_XENLA1.939e-1943.81E3 ubiquitin-protein ligase synoviolin-B OS=Xenopu... [more]
SYVN1_MOUSE1.939e-1943.81E3 ubiquitin-protein ligase synoviolin OS=Mus musc... [more]
SYVN1_HUMAN1.939e-1943.81E3 ubiquitin-protein ligase synoviolin OS=Homo sap... [more]
SYVNA_XENLA2.532e-1943.81E3 ubiquitin-protein ligase synoviolin-A OS=Xenopu... [more]
HRD1_DROME8.146e-1840.38E3 ubiquitin-protein ligase HRD1 OS=Drosophila mel... [more]
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Properties
Property NameValue
Genbank descriptionC06054A11T7 RindPdigS Citrus sinensis cDNA clone C06054A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC921930 ID=FC921930; Name=FC921930; organism=Citrus sinensis; type=EST; length=317bp
ACCATGCATTTAACAGCAGAAGACAATTTTACCCTTCCATGGTGTATTTA
TCAACTTCTAAGATCAGTTTGGTACTGCTTATGAACATGGGTTTGGTCAT
TATGTGCATTTTGTGGCAATTGATCAAGAAGGTGTTTCTTGGTTCTCTCC
GTGAAGCCGAGGTTGAGAGGTTGAATGAGCAGTCAAGGAGAGAGATCATG
GAAATACTCTTTGCTATCACGATTTTCCGGCAGGACTTCTCTGTTTCGTT
TCTTGCTATGGTCACTACGCTTTTGCTGATTAAGGCTTTGCACTGGTTGG
CTCAGAAGAGGGTGGAG
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