FC921930
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC921930 vs. ExPASy Swiss-Prot
Match: HRD1_CAEBR (E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae GN=sel-11 PE=3 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 2.290e-20 Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 3 Query: 3 HAFNSRRQFYPSMVYLSTSKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQSRREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVE 317 +AF +QFYPS+VYLS S S+ +L G+V++ +++QL+K + G LR AE E L+E++ ++E A T+FR DFS F+ LL IK HWLA RV+ Sbjct: 22 NAFVINKQFYPSIVYLSKSNASMAVLYFQGIVLVYLMFQLLKSILFGDLRAAEAEHLSERTWHAVLETCLAFTVFRDDFSAMFVMQFIGLLFIKCFHWLADDRVD 126
BLAST of FC921930 vs. ExPASy Swiss-Prot
Match: SYVN1_DANRE (E3 ubiquitin-protein ligase synoviolin OS=Danio rerio GN=syvn1 PE=2 SV=2) HSP 1 Score: 96.6709 bits (239), Expect = 3.907e-20 Identity = 47/105 (44.76%), Postives = 69/105 (65.71%), Query Frame = 3 Query: 3 HAFNSRRQFYPSMVYLSTSKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQSRREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVE 317 HA+ + QFYP++VYL+ S S+ +L V++ +L +L++KVF G LR AE+E L E+S + E A T+FR DFS F+A+ T LL +K HWLA+ RV+ Sbjct: 21 HAYFLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKLMRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLAEDRVD 125
BLAST of FC921930 vs. ExPASy Swiss-Prot
Match: HRD1_CAEEL (E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis elegans GN=sel-11 PE=1 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 5.102e-20 Identity = 45/105 (42.86%), Postives = 67/105 (63.81%), Query Frame = 3 Query: 3 HAFNSRRQFYPSMVYLSTSKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQSRREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVE 317 +AF +QFYPS+VYLS S S+ ++ G+V++ +++QL+K + G LR AE E L+E++ ++E A T+FR DFS F+ LL IK HWLA RV+ Sbjct: 22 NAFLINKQFYPSIVYLSKSNASMAVIYVQGIVLVYLMFQLLKSILFGDLRAAEAEHLSERTWHAVLETCLAFTVFRDDFSAIFVMQFIGLLFIKCFHWLADDRVD 126
BLAST of FC921930 vs. ExPASy Swiss-Prot
Match: SYVNB_XENLA (E3 ubiquitin-protein ligase synoviolin-B OS=Xenopus laevis GN=syvn1-B PE=2 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 1.939e-19 Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 3 Query: 3 HAFNSRRQFYPSMVYLSTSKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQSRREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVE 317 HA+ + QFYP++VYL+ S S+ +L V++ +L + + KVF G LR AE+E L E+S + E A T+FR DFS F+A+ T LL +K HWLA+ RV+ Sbjct: 15 HAYYLKNQFYPTVVYLTKSSPSMAILYIQAFVLVFLLGKFMGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLAEDRVD 119
BLAST of FC921930 vs. ExPASy Swiss-Prot
Match: SYVN1_MOUSE (E3 ubiquitin-protein ligase synoviolin OS=Mus musculus GN=Syvn1 PE=1 SV=3) HSP 1 Score: 94.3597 bits (233), Expect = 1.939e-19 Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 3 Query: 3 HAFNSRRQFYPSMVYLSTSKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQSRREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVE 317 HA+ + QFYP++VYL+ S S+ +L V++ +L +++ KVF G LR AE+E L E+S + E A T+FR DFS F+A+ T LL +K HWLA+ RV+ Sbjct: 21 HAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKVMGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLAEDRVD 125
BLAST of FC921930 vs. ExPASy Swiss-Prot
Match: SYVN1_HUMAN (E3 ubiquitin-protein ligase synoviolin OS=Homo sapiens GN=SYVN1 PE=1 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 1.939e-19 Identity = 46/105 (43.81%), Postives = 68/105 (64.76%), Query Frame = 3 Query: 3 HAFNSRRQFYPSMVYLSTSKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQSRREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVE 317 HA+ + QFYP++VYL+ S S+ +L V++ +L +++ KVF G LR AE+E L E+S + E A T+FR DFS F+A+ T LL +K HWLA+ RV+ Sbjct: 21 HAYYLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKVMGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLAEDRVD 125
BLAST of FC921930 vs. ExPASy Swiss-Prot
Match: SYVNA_XENLA (E3 ubiquitin-protein ligase synoviolin-A OS=Xenopus laevis GN=syvn1-A PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 2.532e-19 Identity = 46/105 (43.81%), Postives = 67/105 (63.81%), Query Frame = 3 Query: 3 HAFNSRRQFYPSMVYLSTSKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQSRREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVE 317 HA+ + QFYP++VYL+ S S+ +L V++ +L + + KVF G LR AE+E L E+S + E A T+FR DFS F+A+ T LL +K HWLA+ RV+ Sbjct: 15 HAYYLKNQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKFMGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLAEDRVD 119
BLAST of FC921930 vs. ExPASy Swiss-Prot
Match: HRD1_DROME (E3 ubiquitin-protein ligase HRD1 OS=Drosophila melanogaster GN=sip3 PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 8.146e-18 Identity = 42/104 (40.38%), Postives = 69/104 (66.35%), Query Frame = 3 Query: 6 AFNSRRQFYPSMVYLSTSKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQSRREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVE 317 A+ ++QFYP++VY++ S S+ ++ VI+ + +L+ K+FLG+LR AE E L E+ + E A T+FR DF+ F+A+ T LL +K+ HWLA++RV+ Sbjct: 20 AYYQKQQFYPAVVYITKSNASMGVIYIQFFVIVFMFGKLLSKIFLGTLRAAEFEHLLERFWYALTETCLAFTVFRDDFNPRFVALFTVLLFLKSFHWLAEERVD 123 The following BLAST results are available for this feature:
BLAST of FC921930 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >FC921930 ID=FC921930; Name=FC921930; organism=Citrus sinensis; type=EST; length=317bpback to top |