DN617969
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 124.02 bits (310), Expect = 2.489e-28 Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = -1 Query: 225 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 425 GE NV+ QL +AMPQAVTVTPEEREAIERLE MGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED Sbjct: 311 GEENVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 1.156e-25 Identity = 59/71 (83.10%), Postives = 65/71 (91.55%), Query Frame = -1 Query: 225 GGE-GNVLGQLASAMPQ--AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 428 GGE GN+LGQ+A+ MPQ A+ VT EEREAIERLEAMGF+RALVLEVFFACNKNEELAANYLLDHMHEFE+ Sbjct: 349 GGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 105.145 bits (261), Expect = 1.196e-22 Identity = 50/66 (75.76%), Postives = 57/66 (86.36%), Query Frame = -1 Query: 225 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 422 E N+L Q AMPQ + VTPEE EAI RLEAMGFDRALVL+VFFACNK+E+LAANYLLDHM+EF+D Sbjct: 323 EENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 92.4337 bits (228), Expect = 8.024e-19 Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = -1 Query: 225 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 425 GEG++ Q MP A+ VTP E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED Sbjct: 305 GEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 1.788e-18 Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = -1 Query: 225 EGGEGNV--LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 431 EG +G+V Q MP +V VTPEE+E+IERLEAMGFDRA+V+E F +C++NEELAANYLL+H +FED Sbjct: 298 EGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RHP23_SCHPO (UV excision repair protein rhp23 OS=Schizosaccharomyces pombe GN=rhp23 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 3.265e-12 Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = -1 Query: 225 EGGEGNVLGQLASAMPQA---VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 431 EG EG SA+P + +T EE E+I+RL +GFDR +V++ + AC+KNEELAANYL +H HE ED Sbjct: 301 EGAEGE------SALPSGGIQIQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYLFEHGHESED 366
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.621e-11 Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = -1 Query: 249 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 428 GG G + + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL Sbjct: 349 GGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 408
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 1.621e-11 Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = -1 Query: 249 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 428 GG G + + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL Sbjct: 350 GGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 409
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.715e-11 Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = -1 Query: 228 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 425 GE +G+ A M + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL + E Sbjct: 299 GEVGAIGEEAPQM-NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1) HSP 1 Score: 66.6254 bits (161), Expect = 4.715e-11 Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = -1 Query: 228 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 425 GE +G+ A M + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL + E Sbjct: 299 GEVGAIGEEAPQM-NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363 The following BLAST results are available for this feature:
BLAST of DN617969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 12
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Sequences
The
following sequences are available for this feature:
EST sequence >DN617969 ID=DN617969; Name=DN617969; organism=Citrus sinensis; type=EST; length=431bpback to top |