DN617969

Overview
NameDN617969
Unique NameDN617969
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length431
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5764 contig Csv1_Contig5764:881..1312. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 124.02 bits (310), Expect = 2.489e-28
Identity = 60/67 (89.55%), Postives = 63/67 (94.03%), Query Frame = -1
Query:  225 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 425
            GE NV+ QL +AMPQAVTVTPEEREAIERLE MGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct:  311 GEENVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377          
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 1.156e-25
Identity = 59/71 (83.10%), Postives = 65/71 (91.55%), Query Frame = -1
Query:  225 GGE-GNVLGQLASAMPQ--AVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 428
            GGE GN+LGQ+A+ MPQ  A+ VT EEREAIERLEAMGF+RALVLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct:  349 GGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419          
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 1.196e-22
Identity = 50/66 (75.76%), Postives = 57/66 (86.36%), Query Frame = -1
Query:  225 EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 422
            E N+L Q   AMPQ + VTPEE EAI RLEAMGFDRALVL+VFFACNK+E+LAANYLLDHM+EF+D
Sbjct:  323 EENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388          
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 8.024e-19
Identity = 43/67 (64.18%), Postives = 54/67 (80.60%), Query Frame = -1
Query:  225 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 425
            GEG++  Q    MP A+ VTP E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++  +FED
Sbjct:  305 GEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371          
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.788e-18
Identity = 44/71 (61.97%), Postives = 56/71 (78.87%), Query Frame = -1
Query:  225 EGGEGNV--LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 431
            EG +G+V    Q    MP +V VTPEE+E+IERLEAMGFDRA+V+E F +C++NEELAANYLL+H  +FED
Sbjct:  298 EGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368          
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RHP23_SCHPO (UV excision repair protein rhp23 OS=Schizosaccharomyces pombe GN=rhp23 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.265e-12
Identity = 36/72 (50.00%), Postives = 48/72 (66.67%), Query Frame = -1
Query:  225 EGGEGNVLGQLASAMPQA---VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 431
            EG EG       SA+P     + +T EE E+I+RL  +GFDR +V++ + AC+KNEELAANYL +H HE ED
Sbjct:  301 EGAEGE------SALPSGGIQIQITQEESESIDRLCQLGFDRNIVIQAYLACDKNEELAANYLFEHGHESED 366          
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.621e-11
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = -1
Query:  249 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 428
            GG G  + +  S     + VTP+E+EAIERL+A+GF   LV++ +FAC KNE LAAN+LL
Sbjct:  349 GGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 408          
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.621e-11
Identity = 31/60 (51.67%), Postives = 42/60 (70.00%), Query Frame = -1
Query:  249 GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 428
            GG G  + +  S     + VTP+E+EAIERL+A+GF   LV++ +FAC KNE LAAN+LL
Sbjct:  350 GGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 409          
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RD23A_MOUSE (UV excision repair protein RAD23 homolog A OS=Mus musculus GN=Rad23a PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.715e-11
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = -1
Query:  228 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 425
            GE   +G+ A  M   + VTP+E+EAIERL+A+GF  +LV++ +FAC KNE LAAN+LL    + E
Sbjct:  299 GEVGAIGEEAPQM-NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363          
BLAST of DN617969 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.715e-11
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = -1
Query:  228 GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 425
            GE   +G+ A  M   + VTP+E+EAIERL+A+GF  +LV++ +FAC KNE LAAN+LL    + E
Sbjct:  299 GEVGAIGEEAPQM-NYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 363          
The following BLAST results are available for this feature:
BLAST of DN617969 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RD23D_ARATH2.489e-2889.55Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RD23C_ARATH1.156e-2583.10Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RAD23_ORYSJ1.196e-2275.76Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23A_ARATH8.024e-1964.18Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_ARATH1.788e-1861.97Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RHP23_SCHPO3.265e-1250.00UV excision repair protein rhp23 OS=Schizosaccharo... [more]
RD23B_RAT1.621e-1151.67UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE1.621e-1151.67UV excision repair protein RAD23 homolog B OS=Mus ... [more]
RD23A_MOUSE4.715e-1150.00UV excision repair protein RAD23 homolog A OS=Mus ... [more]
RD23A_HUMAN4.715e-1150.00UV excision repair protein RAD23 homolog A OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01O23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617969 ID=DN617969; Name=DN617969; organism=Citrus sinensis; type=EST; length=431bp
GCGTATGATAATTTATAACCAAACATCTTAAGAGAAATAAATAGAGAAAA
TGTTAGCGTCCAAGGATAAACTAGCGACATGAACATCTTGACAAGTGTTC
TCCAGACTCCACAGAGCATATAGTTGGTATAAGACACTGTTTAACCACAA
GAGTATATGCACCCAACATGGAAAAGGAAAAAAAAAAAAAAAGGGGGAGA
ACAAGAAAAGGGTGACTTCAATCAATCCTCAAACTCATGCATGTGATCTA
AGAGATAGTTGGCTGCCAACTCCTCATTCTTGTTGCAAGCAAAGAACACT
TCCAACACTAGGGCACGATCAAAGCCCATTGCTTCAAGACGCTCGATAGC
TTCTCTCTCCTCAGGGGTTACAGTCACAGCCTGTGGCATTGCTGAGGCCA
ACTGACCCAGTACATTCCCCTCTCCTCCTTC
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