DN617956

Overview
NameDN617956
Unique NameDN617956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length669
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617956 vs. ExPASy Swiss-Prot
Match: E138_ARATH (Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.395e-20
Identity = 48/62 (77.42%), Postives = 53/62 (85.48%), Query Frame = 3
Query:  483 GSCVNGLGVNWGTQTTHQLPPKTIVQMLKDNGISKVKLFDAHQGTMIALAGSDIEVMVAIPN 668
            G  VNGLGVNWGT  TH+LPPKT+VQMLKDN I+KVKLFDA + TM ALAGS +EVMVAIPN
Sbjct:   19 GILVNGLGVNWGTMATHKLPPKTVVQMLKDNNINKVKLFDADETTMGALAGSGLEVMVAIPN 80          
BLAST of DN617956 vs. ExPASy Swiss-Prot
Match: E136_ARATH (Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.265e-13
Identity = 35/58 (60.34%), Postives = 43/58 (74.14%), Query Frame = 3
Query:  495 NGLGVNWGTQTTHQLPPKTIVQMLKDNGISKVKLFDAHQGTMIALAGSDIEVMVAIPN 668
            + +G NWGTQ +H LPP  +V+ML++NGI KVKLFDA   T+ AL  S IEVMV IPN
Sbjct:   20 SSIGANWGTQASHPLPPDIVVRMLRENGIQKVKLFDAEYDTLRALGKSGIEVMVGIPN 77          
BLAST of DN617956 vs. ExPASy Swiss-Prot
Match: E135_ARATH (Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.679e-13
Identity = 33/59 (55.93%), Postives = 45/59 (76.27%), Query Frame = 3
Query:  492 VNGLGVNWGTQTTHQLPPKTIVQMLKDNGISKVKLFDAHQGTMIALAGSDIEVMVAIPN 668
            V G+GVNWG+Q  H LPP T+V++L++NGI KVKLF+A    + AL+ + I+VMV IPN
Sbjct:   24 VEGIGVNWGSQARHPLPPATVVRLLRENGIQKVKLFEADSAILKALSRTGIQVMVGIPN 82          
BLAST of DN617956 vs. ExPASy Swiss-Prot
Match: E139_ARATH (Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis thaliana GN=At5g58480 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.115e-12
Identity = 32/62 (51.61%), Postives = 44/62 (70.97%), Query Frame = 3
Query:  483 GSCVNGLGVNWGTQTTHQLPPKTIVQMLKDNGISKVKLFDAHQGTMIALAGSDIEVMVAIPN 668
            G+ V  +G+NWGT+ +H LPP  +V++LK NGI KVKLFDA    + AL+GS+I V + I N
Sbjct:   20 GTTVRAVGINWGTEASHPLPPSKVVELLKSNGIVKVKLFDADPKVLRALSGSNIGVTIGIQN 81          
The following BLAST results are available for this feature:
BLAST of DN617956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
E138_ARATH1.395e-2077.42Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis ... [more]
E136_ARATH1.265e-1360.34Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis ... [more]
E135_ARATH3.679e-1355.93Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis ... [more]
E139_ARATH3.115e-1251.61Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01O16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001O16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617956 ID=DN617956; Name=DN617956; organism=Citrus sinensis; type=EST; length=669bp
CTCAAATTCGTTTCACAAATTTTTGTGTTCCAAAGGAATAAAAATACTTT
TCTTTTTGAGGATGCTGTCTCTGCTCTGCTTCCGTTCCTCCTCTGTCTTA
AACCTCTAACTTTTAACGCGTATTTGTGTCTTTGACAACTTACGATTTTA
TTTTTCTTACTCTCTCCCAAATCTTTGAAAAGATACGAAATACAAAGCAA
AATATTGGATTTTTTGTTTTCGTTTGATATTTCGTTGGTTTCTGTTTTCT
ATTTTTTCTCATCCTCTGTTAGAGGATCTCTTATTTTTCGCTTATCTCTC
GTACCCACCTTGCAAAAGCCGTTGCTTTTCCCTCTATTTTTCTGAAGCTC
TATCCTTTTCTGTTTAGTATTCACTTGTGCAGAAAACCCACCTAACAAAA
ACATTTTTTTCCCGGGAAATAAACAATCACAATAATGAGTAATCCCCTGA
TTCTTAATTTGTTGTTGCTCTTTGTTATTTTGGGGTCTTGCGTTAATGGT
CTTGGTGTCAACTGGGGCACTCAGACTACTCACCAGTTGCCTCCAAAAAC
GATAGTTCAAATGTTAAAGGATAATGGCATATCAAAAGTGAAGCTTTTTG
ATGCACATCAAGGCACCATGATTGCCCTTGCTGGGTCTGACATTGAAGTC
ATGGTTGCTATTCCTAATA
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