DN617955

Overview
NameDN617955
Unique NameDN617955
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length559
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617955 vs. ExPASy Swiss-Prot
Match: E138_ARATH (Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis thaliana GN=At1g64760 PE=1 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 2.487e-48
Identity = 85/117 (72.65%), Postives = 101/117 (86.32%), Query Frame = -1
Query:  209 GQPKFTMDLSGQGQNKMLIGASGVKYMPSQWCMLNPDAKDMSKLVDNIKYACTWSDCTALGYGSSCNNLDANGNASYAFNMYYQIKNQDELACGFQGLGKVTTQNLSQGQCSFIIQL 559
            GQPKF +DLSGQGQ+K LIGA  V Y+P++WC  NP+AKD++KL  NI YACT+SDCTALGYGSSCN LDANGNASYAFNM++Q+KNQDE AC FQGL  +TTQN+SQGQC+F IQ+
Sbjct:  336 GQPKFPIDLSGQGQSKFLIGAQNVPYLPNKWCTFNPEAKDLTKLAANIDYACTFSDCTALGYGSSCNTLDANGNASYAFNMFFQVKNQDESACYFQGLATITTQNISQGQCNFPIQI 452          
BLAST of DN617955 vs. ExPASy Swiss-Prot
Match: E135_ARATH (Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis thaliana GN=At4g31140 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.769e-23
Identity = 55/118 (46.61%), Postives = 73/118 (61.86%), Query Frame = -1
Query:  209 GQPKFTMDLSGQGQNKMLIGASGVKYMPSQWCMLNPDAKDMS-KLVDNIKYACTWSDCTALGYGSSCNNLDANGNASYAFNMYYQIKNQDELACGFQGLGKVTTQNLSQGQCSFIIQL 559
            GQPK+ + L   G    LI A  V Y+  +WC+L P+A     +L  ++ YAC  +DCT+LGYGSSC NL+   N SYAFN YYQ+ NQ + AC F GL  V+T++ S G C F I +
Sbjct:  338 GQPKYQLSL---GSGNGLIPAKDVHYLAKKWCILAPNANLQDPQLGPSVSYACDHADCTSLGYGSSCGNLNLAQNVSYAFNSYYQVSNQLDSACKFPGLSIVSTRDPSVGSCKFKIMI 452          
BLAST of DN617955 vs. ExPASy Swiss-Prot
Match: E136_ARATH (Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis thaliana GN=At5g58090 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.998e-22
Identity = 50/119 (42.02%), Postives = 74/119 (62.18%), Query Frame = -1
Query:  206 GQPKFTMDLSGQGQNKMLIGASGVKYMPSQWCMLNPDAK-DMSKLVDNIKYACTWSDCTALGYGSSCNNLDANGNASYAFNMYYQIKNQDELACGFQGLGKVTTQNLSQGQCSFIIQLD 559
            G PK+ ++L G      LI A GV+Y+  +WC++ P+ + D  ++   + YAC+  DCT+LG G+SC NLD   N SYAFN YYQI++Q + AC F  + +VT  + S G C F I ++
Sbjct:  333 GLPKYALNL-GTTNTGALIQAKGVRYLERKWCVMKPNVRLDDPQVAPAVSYACSLGDCTSLGVGTSCANLDGKQNISYAFNSYYQIQDQLDTACKFPNISEVTKTDPSTGTCRFPIMIE 450          
BLAST of DN617955 vs. ExPASy Swiss-Prot
Match: E139_ARATH (Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis thaliana GN=At5g58480 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.873e-17
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = -1
Query:  206 GQPKFTMDLSGQGQNKMLIGASGVKYMPSQWCMLNPDAKDMSKLVDNIKYACTWSDCTALGYGSSCNNLDANGNASYAFNMYYQIKNQDELACGFQGLGKVTTQNLSQGQCSFIIQLD 559
            GQ K+    + + Q    + A  V+Y+P +WC++N + KD+S        AC  +DCT++  G SC+ +   GN SYAFN  YQ  +    +C F GLG +TT + S+  C F IQLD
Sbjct:  337 GQAKYNFSFNHKNQ----VNAQNVQYLPPKWCVVNNN-KDLSNASARALEACAVADCTSILPGGSCSGIRWPGNVSYAFNSLYQQNDHSAESCNFGGLGLITTVDPSEDNCRFSIQLD 449          
The following BLAST results are available for this feature:
BLAST of DN617955 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
E138_ARATH2.487e-4872.65Glucan endo-1,3-beta-glucosidase 8 OS=Arabidopsis ... [more]
E135_ARATH2.769e-2346.61Glucan endo-1,3-beta-glucosidase 5 OS=Arabidopsis ... [more]
E136_ARATH3.998e-2242.02Glucan endo-1,3-beta-glucosidase 6 OS=Arabidopsis ... [more]
E139_ARATH3.873e-1738.14Glucan endo-1,3-beta-glucosidase 9 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01O16_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001O16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617955 ID=DN617955; Name=DN617955; organism=Citrus sinensis; type=EST; length=559bp
ATCCAATAATCAATAATCCAAAAAAATATAATATAGCTCAAGAAGTAGTC
ATCTAGAAGAAACTAGAAAAAAAGGAAATAAAGAAAAATACATAAATGGT
ATAAATCTAAATCTATAATAGCATAAATGTTAAGATCACAATGAATGCTA
AACCCCAGAGTGAGGGGCTTGAAGAATAAGAGGAAGACTGAGGAGAATAG
CTAGGATCTAATTGGATGATAAAACTGCATTGCCCTTGTGAAAGATTCTG
TGTGGTAACCTTGCCCAAACCTTGAAAGCCACAGGCCAACTCATCCTGAT
TCTTTATCTGATAGTACATATTAAATGCGTATGAAGCATTCCCGTTAGCA
TCCAAGTTATTACAAGAAGAGCCATATCCAAGTGCTGTGCAATCTGACCA
GGTGCAAGCATACTTTATGTTATCAACAAGTTTGCTCATATCCTTGGCAT
CCGGATTAAGCATACACCATTGGCTTGGCATATACTTCACACCACTTGCA
CCTATAAGCATTTTGTTTTGACCCTGACCTGAAAGATCCATTGTGAATTT
AGGCTGTCC
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