DN617951

Overview
NameDN617951
Unique NameDN617951
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617951_ssr120 microsatellite DN617951_ssr120:120..131. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of DN617951 vs. ExPASy Swiss-Prot
Match: TRXL5_ARATH (Thioredoxin-like 5, chloroplastic OS=Arabidopsis thaliana GN=At5g06690 PE=2 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 2.517e-50
Identity = 88/128 (68.75%), Postives = 113/128 (88.28%), Query Frame = -2 
Query:  153 RDVRVEALWPDLSRPTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI 536
            ++ R++A W ++++PT++E+EPIN+ + LD +L  A++LSQPI+I+WMASWCRKCIYLKPKLEKLAAE++ + KFYYVDVNKV + LVKRGNISKMPTIQ+WK+ EMK EVIGGHK WLVIEEVRE+I
Sbjct:   54 KEWRLKAFWSNIAQPTTLEMEPINNVEELDAVLSHARQLSQPIIIEWMASWCRKCIYLKPKLEKLAAEYNNRAKFYYVDVNKVPQTLVKRGNISKMPTIQLWKEDEMKEEVIGGHKGWLVIEEVRELI 181
[Close]
BLAST of DN617951 vs. ExPASy Swiss-Prot
Match: TRXL8_ARATH (Thioredoxin-like 8, chloroplastic OS=Arabidopsis thaliana GN=At5g04260 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.444e-37
Identity = 71/114 (62.28%), Postives = 89/114 (78.07%), Query Frame = -2 
Query:  153 PTSVELEPINDSDHLDQILLRAQELSQPILIDWMASWCRKCIYLKPKLEKLAAEFDTKLKFYYVDVNKVSKDLVKRGNISKMPTIQIWKDGEMKSEVIGGHKAWLVIEEVREMI 494
            P SVEL PI    H DQ++  AQ+L + ++I WMA+WCRKCIYLKPKLEKLAAEF  +L+FY+VDVN V   LV R  ++KMPTIQ+W+DG+ ++EVIGGHKA  V+ EVREMI
Sbjct:   73 PVSVELGPICGESHFDQVMEDAQKLGESVVIVWMAAWCRKCIYLKPKLEKLAAEFYPRLRFYHVDVNAVPYRLVSRAGVTKMPTIQLWRDGQKQAEVIGGHKAHFVVNEVREMI 186
The following BLAST results are available for this feature:
BLAST of DN617951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRXL5_ARATH2.517e-5068.75Thioredoxin-like 5, chloroplastic OS=Arabidopsis t... [more]
TRXL8_ARATH5.444e-3762.28Thioredoxin-like 8, chloroplastic OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01O14_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001O14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617951 ID=DN617951; Name=DN617951; organism=Citrus sinensis; type=EST; length=549bp
AAACAAAATCCTAACACGATCATCGAATGAAAAAATATTTTTCCTATAGA
AGAAAGAGTAGGAAATCAAAATTTACATATACAATAATGTGTAAGATAAG
AGAGAATGAGAGGGATTTTTTTCTTTCTTTCTTTTTATCATACAAATTTT
TTGATCATTTCTCTGACTTCTTCAATTACAAGCCAAGCTTTATGCCCCCC
TATAACTTCTGATTTCATTTCTCCATCTTTCCATATCTGAATTGTTGGCA
TTTTAGAGATGTTGCCACGCTTAACTAGATCTTTAGATACCTTGTTTACA
TCCACGTAATAAAATTTCAATTTGGTATCAAACTCAGCGGCCAATTTCTC
CAGCTTAGGCTTCAAATATATGCATTTTCGGCACCACGAAGCCATCCAGT
CAATAAGGATAGGCTGAGAGAGTTCTTGAGCACGAAGGAGAATCTGATCA
AGATGATCCGAGTCGTTGATGGGTTCCAATTCAACAGAAGTGGGCCTCGA
CAAATCTGGCCACAGAGCTTCAACTCTCACGTCTCTCCTCGCACTCTTG
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