DN617950

Overview
NameDN617950
Unique NameDN617950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617950_ssr539 microsatellite DN617950_ssr539:539..550. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5762 contig Csv1_Contig5762:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617950 vs. ExPASy Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae GN=TRI1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = -3 
Query:  253 VPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIFNGKDSVGFLEIAKLLSQHFVN 474
            V +SA L KFLG+ E  R+  VK IWQYI++HDLQNP ++REI CD+K++ IF  K  +    + KLL++H  N
Sbjct:  124 VLLSAPLQKFLGSEELPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIFGKK--MTMFSMNKLLTKHLFN 195
[Close]
BLAST of DN617950 vs. ExPASy Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe GN=spp27 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 29/54 (53.70%), Postives = 42/54 (77.78%), Query Frame = -3 
Query:  316 PVPVSAQLSKFLGANEASRSDAVKKIWQYIRQHDLQNPANKREIRCDDKLKTIF 477
            P+ +S +L++FLG  + SR   VKK+W+YI+ HDLQ+P +KR I CDDKLK++F
Sbjct:  120 PMKLSPKLAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVF 173
The following BLAST results are available for this feature:
BLAST of DN617950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TRI1_YEAST1.415e-1350.00Protein TRI1 OS=Saccharomyces cerevisiae GN=TRI1 P... [more]
UAF30_SCHPO1.730e-1153.70Upstream activation factor subunit spp27 OS=Schizo... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01O13_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617950 ID=DN617950; Name=DN617950; organism=Citrus sinensis; type=EST; length=707bp
TTTTTTTTTTCTAACAAATCATATGAATTTCATAGCTACCATAGCAACTA
AAAATTTTGAAATACATCAATCTGCACCATCCCTCATTGCAAATCAGATG
TCTTAGCACTTGTACCAAATGTTTTCGATCATACACTAAATCTAAGATTA
GTGGCTCAACTGTGTACACCCATGAGGTTAGATAACAAAAGGTTCTTAAA
AATAAACCAGACCAACATCCAGCTGATGAAACCAAGCTAAAAATCAAGCA
GAGTTTACGAAATGCTGGGACAGCAATTTGGCAATCTCCAGGAAGCCAAC
AGAATCTTTTCCGTTGAAAATGGTCTTCAACTTATCATCACATCGAATCT
CCCTCTTGTTTGCAGGATTCTGGAGGTCGTGTTGTCTGATATATTGCCAG
ATTTTCTTGACAGCGTCGGAGCGAGAGGCCTCGTTGGCTCCGAGAAACTT
GCTCAGTTGTGCAGATACAGGAACCGGTTTCCCAATCCCTCCCTTTGCTT
TCTTGCCAGCAGCTGCTGTTGCTTCTGCTCCGGACTTGGCCGCCGCCGCC
ATCATTGTCCTGCATCCCCCAAACAATCTCGCTGCCATTTTTCCGAACAA
ATATAGAGTCACTCAAGCTAAAACCCTAGGAATGAGAAGAAGTAATAACG
AGTAAAAGGCATGACCACTCGAATCGCTCCTGGAGTTGGGGCCAATTTGC
TGGGCCA
back to top